Jatropha Genome Database

JcCA0307631.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307631.30 - phase: 0 
         (604 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030914001 assembled CDS                                      1011   0.0  

>GSVIVT01030914001 assembled CDS
          Length = 628

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/604 (80%), Positives = 530/604 (87%), Gaps = 29/604 (4%)

Query: 1   MKIKTDTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRS 60
           MKIKT TPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFT+MKRS
Sbjct: 54  MKIKTSTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTDMKRS 113

Query: 61  VVDKNLGPLVKTVMTRCIQCTRCVRFATEIAGVQDLGMLGRGSGEEIGTYVEKLMTSELS 120
           VVDKNLGPLVKTVMTRCIQCTRCVRFATE+AGVQDLGMLGRGSGEEIGTYVEKLMTSELS
Sbjct: 114 VVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELS 173

Query: 121 GNVIDICPVGALTSKPFAFKARNWELKGTESIDVSDAVGSNIRIDSRGPEVMRIIPRLNE 180
           GNVIDICPVGALTSKPFAFKARNWELKGTE+IDV+DAVGSNIRIDSRGPEVMRI+PRLNE
Sbjct: 174 GNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNE 233

Query: 181 DINEEWISDKTRFCYDGLKRQRLNDPMIRGTDGRFKAVSWRDALAVVAEVIHQVKPEEIV 240
           DINEEWISDKTRFCYDGLKRQRLNDPMIRG DGRFK VSWRDALAVVAEV HQVKP+EIV
Sbjct: 234 DINEEWISDKTRFCYDGLKRQRLNDPMIRGADGRFKPVSWRDALAVVAEVAHQVKPKEIV 293

Query: 241 GVAGKLSDAESMMALKDFLNKMGSNNVWCEGNGPNPNADLRSGYIMNSSISGLEKADVFL 300
           G+AG+LSDAESMMALKDFLNKMGSNNV CEGNG +P ADLRSGY++NS+I+GLEKADVFL
Sbjct: 294 GIAGQLSDAESMMALKDFLNKMGSNNVLCEGNGSHPCADLRSGYLLNSNIAGLEKADVFL 353

Query: 301 LVGTQPRVEAAMVNARIRKTVRATNAKVGYIGPPSDFNYDCEHLGTGPQTLLEIAEGRHP 360
           LVGTQPRVEA MVNARIRKTV+AT+AKVGYIGP +DFNYD +HLGTGPQTLLEIAE    
Sbjct: 354 LVGTQPRVEAPMVNARIRKTVQATHAKVGYIGPATDFNYDHQHLGTGPQTLLEIAE---- 409

Query: 361 FYSKILNAKNPAIIVGAGIFERSDKDAIFSTVDAIAKKANVVRPDWNGFNVXXXXXXXXX 420
                                    DAIF+ V+ IAK   V+RPDWNG NV         
Sbjct: 410 -------------------------DAIFAAVETIAKLGKVIRPDWNGLNVLLLNAAQAA 444

Query: 421 XXXXXXVPESSQSIESAKFVYLMGADDVNLDKLPNDAFLVYQGHHGDRGVYRANVILPAA 480
                 VPESS+SIESAKF+YLMGADDVNL+K+P+DAF+VYQGHHGD+ VYRANVILPAA
Sbjct: 445 ALDLGLVPESSKSIESAKFLYLMGADDVNLEKVPDDAFVVYQGHHGDQSVYRANVILPAA 504

Query: 481 AFTEKEGTYANTEGCAQQTLPAVPTVGDARDDWKIIRALSEVAGARLPYDSIGAIRSRIR 540
           AF+EKEGTY NTEGC QQTLPAVPTVGD+RDDWKIIRALSEVAG +LPYD++GAIRSRI+
Sbjct: 505 AFSEKEGTYENTEGCTQQTLPAVPTVGDSRDDWKIIRALSEVAGVQLPYDTLGAIRSRIK 564

Query: 541 NVAPNLLSLDEREPATFWASLKPECTQKISSTPFNASVENFYMTDAITRASKIMAQCSAL 600
            +APNL ++DERE ATF  SLKPE ++K+S + F ++VENFYMTD+ITRASKIMAQCSA 
Sbjct: 565 TLAPNLYNMDEREAATFSTSLKPELSEKMSLSAFGSAVENFYMTDSITRASKIMAQCSAT 624

Query: 601 LLKK 604
           LLKK
Sbjct: 625 LLKK 628