Jatropha Genome Database

JcCA0307631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307631.20 - phase: 0 
         (83 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014257001 assembled CDS                                        92   5e-20
GSVIVT01021139001 assembled CDS                                        91   9e-20

>GSVIVT01014257001 assembled CDS
          Length = 92

 Score = 92.0 bits (227), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 56/82 (68%)

Query: 1  MARRKTKRVLKKPVRVEKLETTFTCPFCNHRHSVACVIDRKLGFGEAECSVCKVNYVTKI 60
          M +RK++       R++KL+T F+CPFCNH  SV C ID K   GEA C +C+ ++   +
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSMTV 60

Query: 61 NPLTEPIDIYSEWIDECVGVNT 82
          N L+EPID+YSEWIDEC  VNT
Sbjct: 61 NALSEPIDVYSEWIDECERVNT 82


>GSVIVT01021139001 assembled CDS
          Length = 128

 Score = 91.3 bits (225), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 54/82 (65%)

Query: 1   MARRKTKRVLKKPVRVEKLETTFTCPFCNHRHSVACVIDRKLGFGEAECSVCKVNYVTKI 60
           M +RK++       R++KL+T F+CPFCNH   V C ID K   GEA C +C+ ++ T +
Sbjct: 34  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMKNLIGEASCRICQESFSTTV 93

Query: 61  NPLTEPIDIYSEWIDECVGVNT 82
             LTEPIDIYSEWIDEC  VN 
Sbjct: 94  TALTEPIDIYSEWIDECERVNN 115