Jatropha Genome Database

JcCA0307531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307531.10 + phase: 0 /partial
         (336 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026448001 assembled CDS                                       414   e-116
GSVIVT01026439001 assembled CDS                                       187   4e-48
GSVIVT01026438001 assembled CDS                                        54   1e-07

>GSVIVT01026448001 assembled CDS
          Length = 607

 Score =  414 bits (1065), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/340 (62%), Positives = 262/340 (77%), Gaps = 11/340 (3%)

Query: 1   MGVELTQQ---FNEMEDLNFSDSDLVYHVRDALISAKTGDNESYHQLVGVMHHSKRLSSD 57
           MGVEL      F+EME++NFSDS+LVYHVR AL S   GD++SY QL+GV+HH +RL+ D
Sbjct: 1   MGVELATDRAGFHEMEEVNFSDSELVYHVRHALQSVPLGDSDSYDQLIGVLHHKERLAPD 60

Query: 58  EVALLVTSLKALSGAVSCIDNIYHESLLSSIFGMSMWNYGPDVMDALLELVISLAASNVK 117
           EVALLVTSLKALSGAVSCID ++H+SLLSSIFGMS+WNYGPDVMDALLEL++SLAAS+  
Sbjct: 61  EVALLVTSLKALSGAVSCIDMVHHKSLLSSIFGMSLWNYGPDVMDALLELILSLAASSGN 120

Query: 118 YVDACLEMLVGNFVPPMYLVDVLKQPRGHGKKDQVLSRVHTALQDIAALVPMAALRLSNV 177
           Y+D  L+MLV NF+PP  L+D LKQPRG  +KDQVLSRVH+ L+DIA LVP+A  RL  +
Sbjct: 121 YLDCSLDMLVSNFMPPYSLLDFLKQPRGLARKDQVLSRVHSTLKDIADLVPLAPSRLVPI 180

Query: 178 VVHRMPTTYKKDLETDRLKYRTEIYVENMLRLESGAIREFVGNRMIMAVVDMLVELDVAI 237
           V+ RMP  + K+           IYVENMLRLE GAIRE VGN M++A++D LV+LDV I
Sbjct: 181 VIQRMPNVFTKE-------PLIMIYVENMLRLEGGAIRELVGNMMLVALMDRLVDLDVEI 233

Query: 238 GWDDILRDDSSKGIFAIELEEGDIGSDDEENDIGEFPRTS-THKSLGKNVVADLLDGLMV 296
            W+++L+DD SKGIF +ELE+ +  +DD END GE  R S + KSLG N++A+ LD LMV
Sbjct: 234 AWEEVLQDDCSKGIFEMELEDMEEPADDVENDGGELHRGSLSRKSLGGNLIAEKLDSLMV 293

Query: 297 QTFEHLELCANNKRLSEVFETLLDSFMITILNTYKSKFSQ 336
            TFEHLE C    RL EVFETL+ SF  T+LN +KSKF+Q
Sbjct: 294 LTFEHLESCEAGGRLIEVFETLVLSFQTTVLNAFKSKFAQ 333


>GSVIVT01026439001 assembled CDS
          Length = 235

 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/165 (54%), Positives = 123/165 (74%), Gaps = 7/165 (4%)

Query: 88  IFGMSMWNYGPDVMDALLELVISLAASNVKYVDACLEMLVGNFVPPMYLVDVLKQPRGHG 147
           +FGM +WNYGPDVMDALLEL++SLAAS+  Y+D CL++LV NF+PP   +D+LKQ RG  
Sbjct: 75  VFGMILWNYGPDVMDALLELILSLAASSGNYLDGCLDVLVSNFMPPYSFLDLLKQSRGLA 134

Query: 148 KKDQVLSRVHTALQDIAALVPMAALRLSNVVVHRMPTTYKKDLETDRLKYRTEIYVENML 207
           +KDQVLSRVH+  +DI+ LVP+   RL   V+ RMP  + ++           ++VENML
Sbjct: 135 RKDQVLSRVHSTSEDISDLVPLVPSRLVPKVIQRMPNVFTEE-------PLIVLHVENML 187

Query: 208 RLESGAIREFVGNRMIMAVVDMLVELDVAIGWDDILRDDSSKGIF 252
           RLESGAI+E VG  M++A++D LV+LDV I W++IL+DD S+G+F
Sbjct: 188 RLESGAIQELVGKMMLVAMMDRLVDLDVEIAWEEILQDDYSQGMF 232


>GSVIVT01026438001 assembled CDS
          Length = 61

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/44 (59%), Positives = 29/44 (65%)

Query: 291 LDGLMVQTFEHLELCANNKRLSEVFETLLDSFMITILNTYKSKF 334
           LD L V TFEHLE C    RL EVF+TL+ SF  T+LN YKS  
Sbjct: 15  LDSLRVLTFEHLESCEGGGRLIEVFKTLIPSFQTTVLNAYKSNL 58