Jatropha Genome Database

JcCA0307381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307381.10 - phase: 0 /partial
         (515 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035967001 assembled CDS                                       809   0.0  

>GSVIVT01035967001 assembled CDS
          Length = 514

 Score =  809 bits (2089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/504 (76%), Positives = 429/504 (85%)

Query: 12  IALVLFLLPNLFFITQADSKCKAWLVQSIPTDMPQLRRVPGVLTTGDVLRWLAGNSTKGL 71
           + +VL ++  L    ++ S+CKAW+VQSIPT MP L  V GVL+T DV +WLAGNS+  L
Sbjct: 10  VFIVLLVIQALGVNAKSSSQCKAWIVQSIPTHMPHLPPVSGVLSTADVFQWLAGNSSLSL 69

Query: 72  DIIAQYWQLIANSKDPRSGDYGYSKSDMEKFGAFEGFGVYKAIENAADRNVSIRLLQHSG 131
           DIIAQYWQL A+  DP SGDYGYSK+DM KFGA EGF VY+A+ENAADRN+SIRLLQHSG
Sbjct: 70  DIIAQYWQLNAHPDDPLSGDYGYSKADMHKFGAHEGFDVYRALENAADRNISIRLLQHSG 129

Query: 132 VYPDFTKEPNDLASGRLNVDNVTLLLGEWWGSGIVHAKVWISDSRDVYIGSANNDWKSLT 191
           VYPD+TKEP+DLASGR NV+NVTLLLGEWWGSGIVHAKVWISDSRDVYIGSANNDWKSLT
Sbjct: 130 VYPDYTKEPSDLASGRPNVENVTLLLGEWWGSGIVHAKVWISDSRDVYIGSANNDWKSLT 189

Query: 192 QVKEVGIYLVGCKKIVGKVETYFENLWKLAHLNSSAYTRSVWDQQWQINRTVPCWSHFID 251
           QVKEVGIYLV C  I  +VE Y+ NLWKLA LN SAYT +VWDQQWQINR VPCWSHF+ 
Sbjct: 190 QVKEVGIYLVDCPSIARQVEIYYNNLWKLASLNVSAYTTTVWDQQWQINRQVPCWSHFLT 249

Query: 252 SKARCRSPLPTFVEVPHVAGYPVLSDPHMIKVPIKTPGQRFSTLEPYLSYLSFAPPELSF 311
            + RCRSPLP +V VPHV GYP LSDP M K PI+TPG   ST +P  S LSFAPPELSF
Sbjct: 250 PRERCRSPLPRYVAVPHVVGYPTLSDPRMFKTPIQTPGHNCSTSKPQSSCLSFAPPELSF 309

Query: 312 GKYQTDEQGWIDTIKSVGSGSTVRINTMDWLGQSQFTKEKVYWSSLSSAISEVIFSKHAT 371
           GK+Q DEQ W+DTIKSVG+G+TVRIN+MDWLGQSQ+ ++ VYWSSLSSA+SEV+FSKHA 
Sbjct: 310 GKHQADEQAWVDTIKSVGTGATVRINSMDWLGQSQYMQQTVYWSSLSSAVSEVVFSKHAK 369

Query: 372 VKVLVAYWAHFIDNTDQYLKSLLYSDILCNSSKYNKCHGKVEIKYYVVPGYNLTGPATRN 431
           VK+LVAYWAHFI+NTDQYLKSLLYS++LC SSKYNKC GKVEIKYY VPG+NLTGPA  N
Sbjct: 370 VKILVAYWAHFINNTDQYLKSLLYSNVLCYSSKYNKCSGKVEIKYYKVPGFNLTGPAIHN 429

Query: 432 GKRTGNKYPAFTRVNHGKYAVSDVRAHIGTSNLVWDYFYTTAGVSFGTYNPAIVLQLQKI 491
           G  TGN YP FTRVNHGKYAVSDVRAHIGTSNLVWDYFY+TAGVSFGTYNPAIV QLQ+I
Sbjct: 430 GTSTGNIYPGFTRVNHGKYAVSDVRAHIGTSNLVWDYFYSTAGVSFGTYNPAIVSQLQEI 489

Query: 492 FDADWDSPYAVPFEGLEAGHAFSS 515
           FDADW+SPYAVP E LE G   SS
Sbjct: 490 FDADWNSPYAVPVEPLEEGQFHSS 513