Jatropha Genome Database

JcCA0307371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307371.10 + phase: 0 
         (327 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037382001 assembled CDS                                       483   e-137

>GSVIVT01037382001 assembled CDS
          Length = 394

 Score =  483 bits (1242), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 238/333 (71%), Positives = 271/333 (81%), Gaps = 8/333 (2%)

Query: 1   MATAHLLCNNHIFNPSRHSFSKSNLPSTRPSGSVYFN---QRQRVPLVK----ATKKQLE 53
           MA++   C+ H  +PS +S  ++ LPS RP GS  F    Q QR P ++    A +KQ+E
Sbjct: 3   MASSQFFCD-HQLHPSCNSIRRTTLPSFRPHGSSSFRPKPQFQRTPFLRVRASAGRKQVE 61

Query: 54  IVYDPDERLNKLADDVDKNAPLSRLTLFSPCKINVFLRITSKREDGYHDLASLFHVISLG 113
           IVY+PDER+N LAD+VDKNA LSRLTLFSPCKINVFLRIT KR DG+HDLASLFHVISLG
Sbjct: 62  IVYNPDERINNLADEVDKNAGLSRLTLFSPCKINVFLRITGKRADGFHDLASLFHVISLG 121

Query: 114 DTIKFSLSPSKSKDRLSTNVSGVPLDERNLVIKALNLYRKKTGTDNFFWIHLDKKVPXXX 173
           D IKFSLSPSK+KDRLSTNV GVPLDE NL+IKALNLYRKKTGTDN+FW+HLDKKVP   
Sbjct: 122 DIIKFSLSPSKTKDRLSTNVPGVPLDESNLIIKALNLYRKKTGTDNYFWVHLDKKVPTGA 181

Query: 174 XXXXXXXXXXXXXWAANQFSGGIATENDLLEWSSEIGSDISFFFSHGAAYCTGRGEIVQD 233
                        WAANQFSG +ATE +L +WSSEIGSDI FFFS+GAA+CTGRGE+V+D
Sbjct: 182 GLGGGSSNAATALWAANQFSGCLATEKELQQWSSEIGSDIPFFFSNGAAFCTGRGEVVED 241

Query: 234 IPSPVPLDIPMVLIKPQEACPTGEVYKRFRLDQTSQVDPLTLLEKISNSGISQDVCINDL 293
           I  P+PLDIPMVL+KP +AC T EVYK  RLDQTS+VDP+TLLEKIS + ISQDVCINDL
Sbjct: 242 ISLPIPLDIPMVLVKPPQACSTAEVYKHLRLDQTSKVDPITLLEKISKNRISQDVCINDL 301

Query: 294 EPPAFEVLPSLKRLKQRIMAASRGQYDAVFMSG 326
           EPPAFEVLPSLKRLKQRI+AASRGQYDAVFMSG
Sbjct: 302 EPPAFEVLPSLKRLKQRIIAASRGQYDAVFMSG 334