Jatropha Genome Database

JcCA0307051.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307051.30 - phase: 0 
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031566001 assembled CDS                                       290   3e-79
GSVIVT01037763001 assembled CDS                                       287   4e-78
GSVIVT01006249001 assembled CDS                                       116   8e-27

>GSVIVT01031566001 assembled CDS
          Length = 214

 Score =  290 bits (743), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 145/178 (81%), Positives = 150/178 (84%), Gaps = 3/178 (1%)

Query: 54  KPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 113
           +PANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL
Sbjct: 25  QPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 84

Query: 114 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKK 173
           VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR                         KK
Sbjct: 85  VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR---KKKTTAKKETTEEGEGGATEETKK 141

Query: 174 SNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYM 231
           SNHV RKLEKRQ+D +LDPHIEEQFG+GRLLA ISSRPGQCGRADGYILEGKELEFYM
Sbjct: 142 SNHVLRKLEKRQQDHRLDPHIEEQFGSGRLLASISSRPGQCGRADGYILEGKELEFYM 199


>GSVIVT01037763001 assembled CDS
          Length = 212

 Score =  287 bits (734), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 142/178 (79%), Positives = 150/178 (84%), Gaps = 3/178 (1%)

Query: 54  KPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 113
           +PA+TKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL
Sbjct: 25  QPASTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNEL 84

Query: 114 VRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXKK 173
           VRTQTLVKSAI+QVDAAPFKQWYLQHYG+DIGR                         KK
Sbjct: 85  VRTQTLVKSAIIQVDAAPFKQWYLQHYGLDIGR---KKKASATAKKEGEEGDGPAEETKK 141

Query: 174 SNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFYM 231
           SNHV RKLEKRQ++ KLDPHIEEQFG+GRLLA ISSRPGQCGRADGYILEGKELEFYM
Sbjct: 142 SNHVVRKLEKRQQEHKLDPHIEEQFGSGRLLAAISSRPGQCGRADGYILEGKELEFYM 199


>GSVIVT01006249001 assembled CDS
          Length = 92

 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 54/59 (91%), Positives = 56/59 (94%)

Query: 172 KKSNHVQRKLEKRQKDRKLDPHIEEQFGAGRLLACISSRPGQCGRADGYILEGKELEFY 230
           KKS+HV RKLEKRQ DRKLDPHIEEQF +GRLLACISSRPGQCGRADGYILEGKELEFY
Sbjct: 18  KKSSHVLRKLEKRQADRKLDPHIEEQFSSGRLLACISSRPGQCGRADGYILEGKELEFY 76