Jatropha Genome Database

JcCA0307051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0307051.10 + phase: 1 /pseudo/partial
         (147 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002010001 assembled CDS                                       206   2e-54
GSVIVT01032523001 assembled CDS                                       186   4e-48
GSVIVT01033168001 assembled CDS                                       181   9e-47
GSVIVT01009290001 assembled CDS                                       180   2e-46
GSVIVT01016135001 assembled CDS                                       174   1e-44
GSVIVT01031405001 assembled CDS                                       143   2e-35
GSVIVT01033767001 assembled CDS                                       141   1e-34
GSVIVT01034719001 assembled CDS                                       139   4e-34
GSVIVT01025737001 assembled CDS                                       130   2e-31

>GSVIVT01002010001 assembled CDS
          Length = 630

 Score =  206 bits (525), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 97/116 (83%), Positives = 100/116 (86%)

Query: 1   DADFQPGPDFXKKTIPYFKGNDDLALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQXX 60
           DADFQPGPDF KKTIPYFKGNDDLALVQTRW FVNKDENLLTRLQNINLSFHFEVEQQ  
Sbjct: 323 DADFQPGPDFLKKTIPYFKGNDDLALVQTRWAFVNKDENLLTRLQNINLSFHFEVEQQVN 382

Query: 61  XXXXXXXXXXXTAGVWRTKALEECGGWMERTTVEDMDIAVRAHLCGWKFIYLNDVK 116
                      TAGVWR KALE+CGGW+ERTTVEDMD+AVRAHLCGWKFIYLNDVK
Sbjct: 383 GVFINFFGFNGTAGVWRIKALEDCGGWLERTTVEDMDVAVRAHLCGWKFIYLNDVK 438


>GSVIVT01032523001 assembled CDS
          Length = 662

 Score =  186 bits (471), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 95/118 (80%)

Query: 1   DADFQPGPDFXKKTIPYFKGNDDLALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQXX 60
           DADFQP PDF K+TIP+FKGN ++ LVQ RW+FVNKDENLLTRLQNINL FHFEVEQQ  
Sbjct: 298 DADFQPNPDFLKQTIPHFKGNPEVGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVN 357

Query: 61  XXXXXXXXXXXTAGVWRTKALEECGGWMERTTVEDMDIAVRAHLCGWKFIYLNDVKSP 118
                      TAGVWR KALEE GGW+ERTTVEDMDIAVRAHL GWKFI+LNDVK P
Sbjct: 358 GLFLEFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVKVP 415


>GSVIVT01033168001 assembled CDS
          Length = 403

 Score =  181 bits (460), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 86/116 (74%), Positives = 93/116 (80%)

Query: 1   DADFQPGPDFXKKTIPYFKGNDDLALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQXX 60
           DADFQP PDF K+T+P+F+GN DL LVQ RW FVNKDENLLTRLQNINL FHFEVEQQ  
Sbjct: 98  DADFQPNPDFLKQTVPHFQGNPDLGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVN 157

Query: 61  XXXXXXXXXXXTAGVWRTKALEECGGWMERTTVEDMDIAVRAHLCGWKFIYLNDVK 116
                      TAGVWR KALE+ GGW+ERTTVEDMDIAVRAHL GWKFI+LNDVK
Sbjct: 158 GVFLNFFGFNGTAGVWRIKALEDSGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVK 213


>GSVIVT01009290001 assembled CDS
          Length = 647

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/116 (73%), Positives = 95/116 (81%)

Query: 1   DADFQPGPDFXKKTIPYFKGNDDLALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQXX 60
           DADFQP PDF K+T+P+FK N++L LVQ RW+FVNKDENLLTRLQNINLSFHFEVEQQ  
Sbjct: 287 DADFQPTPDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLSFHFEVEQQVN 346

Query: 61  XXXXXXXXXXXTAGVWRTKALEECGGWMERTTVEDMDIAVRAHLCGWKFIYLNDVK 116
                      TAGVWR KALE+ GGW+ERTTVEDMDIAVRAHL GWKFI+LNDV+
Sbjct: 347 GVFINFFGFNGTAGVWRIKALEDSGGWLERTTVEDMDIAVRAHLQGWKFIFLNDVE 402


>GSVIVT01016135001 assembled CDS
          Length = 436

 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/116 (71%), Positives = 90/116 (77%)

Query: 1   DADFQPGPDFXKKTIPYFKGNDDLALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQXX 60
           DADFQP PDF  +T+P+FK N +L LVQ RW FVNKDENLLTRLQNINL FHFEVEQQ  
Sbjct: 98  DADFQPNPDFLMQTVPHFKDNPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVN 157

Query: 61  XXXXXXXXXXXTAGVWRTKALEECGGWMERTTVEDMDIAVRAHLCGWKFIYLNDVK 116
                      TAGVWR K LE+ GGW+ERTTVEDMDIAVRAHL GWKFI+LNDVK
Sbjct: 158 GVFINFFGFNGTAGVWRIKTLEDSGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVK 213


>GSVIVT01031405001 assembled CDS
          Length = 429

 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 84/124 (67%), Gaps = 2/124 (1%)

Query: 1   DADFQPGPDFXKKTIPYFKGNDDLALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQXX 60
           DADFQP PD+ K+ IP+   N D+ALVQ RW FVN DE L+TR+Q ++L +HF VEQ+  
Sbjct: 91  DADFQPEPDYLKRAIPFLVYNSDIALVQGRWRFVNADECLMTRMQEMSLDYHFTVEQEVG 150

Query: 61  XXXXXXXXXXXTAGVWRTKALEECGGWMERTTVEDMDIAVRAHLCGWKFIYLND--VKSP 118
                      TAGVWR  A+ E GGW +RTTVEDMD+AVRA L GWKF+YL D  VKS 
Sbjct: 151 SATHAFFGFNGTAGVWRIAAINEAGGWKDRTTVEDMDLAVRASLKGWKFVYLGDLQVKSE 210

Query: 119 MKHT 122
           +  T
Sbjct: 211 LPST 214


>GSVIVT01033767001 assembled CDS
          Length = 540

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 91/139 (65%), Gaps = 2/139 (1%)

Query: 1   DADFQPGPDFXKKTIPYFKGNDDLALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQXX 60
           DADFQP PDF  +T+P+   N ++ALVQ RW FVN DE L+TR+Q ++L +HF VEQ+  
Sbjct: 195 DADFQPEPDFLWRTVPFLVHNPEIALVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVG 254

Query: 61  XXXXXXXXXXXTAGVWRTKALEECGGWMERTTVEDMDIAVRAHLCGWKFIYLNDVKSPMK 120
                      TAGVWR  AL E GGW +RTTVEDMD+AVRA L GWKF+YL  +K  +K
Sbjct: 255 SSTYAFFGFNGTAGVWRIAALNEAGGWKDRTTVEDMDLAVRASLKGWKFVYLGTLK--VK 312

Query: 121 HTKNSSIAGIQVQCNCFAC 139
           +   S+    + Q + ++C
Sbjct: 313 NELPSTFKAYRYQQHRWSC 331


>GSVIVT01034719001 assembled CDS
          Length = 449

 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 90/139 (64%), Gaps = 2/139 (1%)

Query: 1   DADFQPGPDFXKKTIPYFKGNDDLALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQXX 60
           DADFQP PDF  +TIP+   N ++ LVQ RW FVN DE L+TR+Q ++L +HF VEQ+  
Sbjct: 111 DADFQPEPDFLWRTIPFLVHNPEIGLVQARWKFVNSDECLMTRMQEMSLDYHFTVEQEVG 170

Query: 61  XXXXXXXXXXXTAGVWRTKALEECGGWMERTTVEDMDIAVRAHLCGWKFIYLNDVKSPMK 120
                      TAGVWR  AL E GGW +RTTVEDMD+AVRA L GWKF+Y+  +K  +K
Sbjct: 171 SSSHAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFVYVGALK--VK 228

Query: 121 HTKNSSIAGIQVQCNCFAC 139
           +   S+    + Q + ++C
Sbjct: 229 NELPSTFKAYRYQQHRWSC 247


>GSVIVT01025737001 assembled CDS
          Length = 443

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 2/139 (1%)

Query: 1   DADFQPGPDFXKKTIPYFKGNDDLALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQXX 60
           DADFQP  +F  +TIP+   N  L LVQ RW FVN DE L+TRLQ ++L +HF VEQ+  
Sbjct: 144 DADFQPEENFLWRTIPFLLENPGLGLVQARWKFVNADECLMTRLQEMSLDYHFSVEQEVG 203

Query: 61  XXXXXXXXXXXTAGVWRTKALEECGGWMERTTVEDMDIAVRAHLCGWKFIYLNDVKSPMK 120
                      TAGVWR +A+ + GGW +RTTVEDMD+AVRA L GWKF+++ D+   +K
Sbjct: 204 SSTCSFFGFNGTAGVWRIQAINDAGGWKDRTTVEDMDLAVRASLKGWKFLFVGDL--SVK 261

Query: 121 HTKNSSIAGIQVQCNCFAC 139
           +   S+    + Q + ++C
Sbjct: 262 NELPSTFKAYRYQQHRWSC 280