Jatropha Genome Database

JcCA0306971.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306971.20 + phase: 0 /partial
         (217 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002505001 assembled CDS                                       267   3e-72

>GSVIVT01002505001 assembled CDS
          Length = 328

 Score =  267 bits (683), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 128/162 (79%), Positives = 143/162 (88%)

Query: 56  VPRASVAVEQQTQESKLALIRIGTRGSPLALAQAYETRDKLMATHSELAEEGAIQIVIIK 115
           V RAS+AVEQ+T ++K+AL+RIGTRGSPLALAQAYETRDKLMA HSELAEEGAIQIV+IK
Sbjct: 2   VIRASIAVEQETHKTKVALVRIGTRGSPLALAQAYETRDKLMAAHSELAEEGAIQIVVIK 61

Query: 116 TTGDKILSQPLADIGGKGLFTKEIDEALINGEIDIAVHSMKDVPTYLPEKTILPCNLERE 175
           TTGDKIL+QPLADIGGKGLFTKEIDEAL+NG+IDIAVHSMKDVPTYLP+KTILPCNL RE
Sbjct: 62  TTGDKILTQPLADIGGKGLFTKEIDEALLNGDIDIAVHSMKDVPTYLPDKTILPCNLPRE 121

Query: 176 DVRDAFIXXXXXXXXXXXXXXVIGTASLRRKSQILHRYASLS 217
           DVRDAFI              ++GTASLRRKSQ+LHRY SL+
Sbjct: 122 DVRDAFISLTAASLSELPAGSIVGTASLRRKSQLLHRYKSLN 163