Jatropha Genome Database

JcCA0306971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306971.10 - phase: 0 
         (102 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003307001 assembled CDS                                       180   9e-47
GSVIVT01030502001 assembled CDS                                       178   6e-46
GSVIVT01003301001 assembled CDS                                       167   1e-42
GSVIVT01000503001 assembled CDS                                       101   6e-23
GSVIVT01021058001 assembled CDS                                       101   7e-23
GSVIVT01011822001 assembled CDS                                        51   1e-07

>GSVIVT01003307001 assembled CDS
          Length = 103

 Score =  180 bits (457), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 85/100 (85%), Positives = 90/100 (90%)

Query: 2   SSGVIGQTPEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFN 61
           ++G      EEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQL+KLM+AYCDRQSVE N
Sbjct: 3   ATGGAAGGQEEDKKPTDQGAHINLKVKGQDGNEVFFRIKRSTQLRKLMSAYCDRQSVELN 62

Query: 62  SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGLLW 101
           SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG+ W
Sbjct: 63  SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGVAW 102


>GSVIVT01030502001 assembled CDS
          Length = 101

 Score =  178 bits (451), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 87/97 (89%), Positives = 90/97 (92%), Gaps = 1/97 (1%)

Query: 3  SGVIGQTPE-EDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFN 61
          SGV   + + EDKKPNDQS HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV+ N
Sbjct: 2  SGVANPSSQDEDKKPNDQSGHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 61

Query: 62 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 98
          SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 62 SIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 98


>GSVIVT01003301001 assembled CDS
          Length = 91

 Score =  167 bits (422), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 78/84 (92%), Positives = 81/84 (96%)

Query: 18  DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRGEQT 77
           DQ AHINLKVKGQDGNEVFFRIKRSTQL+KLM+AYCDRQSVE NSIAFLFDGRRLRGEQT
Sbjct: 2   DQGAHINLKVKGQDGNEVFFRIKRSTQLRKLMSAYCDRQSVELNSIAFLFDGRRLRGEQT 61

Query: 78  PDELEMEDGDEIDAMLHQTGGLLW 101
           PDELEMEDGDEIDAMLHQTGG+ W
Sbjct: 62  PDELEMEDGDEIDAMLHQTGGVAW 85


>GSVIVT01000503001 assembled CDS
          Length = 146

 Score =  101 bits (252), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/60 (81%), Positives = 53/60 (88%)

Query: 38  RIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTG 97
           R  RST L+KLM+AY  RQSVE NSIAFLFDG RLRGEQTPDELEM+DGDEI+AMLHQTG
Sbjct: 58  RCIRSTLLRKLMSAYSGRQSVELNSIAFLFDGCRLRGEQTPDELEMKDGDEINAMLHQTG 117


>GSVIVT01021058001 assembled CDS
          Length = 94

 Score =  101 bits (252), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 68/89 (76%), Gaps = 1/89 (1%)

Query: 10 PEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDG 69
          P+  K+P DQS  I +KVK QDG +++FRI RST L++L+ AYC + ++++ ++ F+++G
Sbjct: 2  PQPAKRPLDQST-IEVKVKSQDGRQLYFRINRSTPLQRLLVAYCQQINIDYKTMQFVYNG 60

Query: 70 RRLRGEQTPDELEMEDGDEIDAMLHQTGG 98
           R+  +QTP++L MEDGDEIDA+ HQ GG
Sbjct: 61 NRVTAKQTPEQLGMEDGDEIDALTHQMGG 89


>GSVIVT01011822001 assembled CDS
          Length = 225

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 15  KPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEFNSIAFLFDGRRLRG 74
           KP  + A I + ++ +DG + F RI    + ++L   Y D+  ++  S+ F FDG ++  
Sbjct: 145 KPPCERAKIVISIQDKDGLKQF-RIYMDDKFERLFKMYADKLKLDLKSLIFCFDGDKISP 203

Query: 75  EQTPDELEMEDGDEIDAMLHQT 96
             TPDEL MED D ++  +  +
Sbjct: 204 TATPDELGMEDNDIVEVHIKSS 225