Jatropha Genome Database

JcCA0306831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306831.10 - phase: 0 /pseudo/partial
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022826001 assembled CDS                                       130   2e-31
GSVIVT01018104001 assembled CDS                                        70   3e-13
GSVIVT01012222001 assembled CDS                                        67   2e-12
GSVIVT01000746001 assembled CDS                                        65   1e-11
GSVIVT01015987001 assembled CDS                                        63   5e-11

>GSVIVT01022826001 assembled CDS
          Length = 379

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 100/188 (53%), Gaps = 41/188 (21%)

Query: 1   VRDVIEHMLDDDEDMANLYLTRKLIQVQELEAMFGGA*HSNRTTTINAQAPHLHRLGSK- 59
           VRD +EH+LDD+EDMA+LYLTRK IQ Q+ EA+ G A  ++  T     AP+L RL S  
Sbjct: 194 VRDELEHLLDDNEDMADLYLTRKWIQNQQNEALLGAAVSNSLITP----APYLPRLSSHR 249

Query: 60  ------------------------------------MSVREYINVAEDNVNVQLDDERNE 83
                                               +SVREYI+  ED VN+QLD++RNE
Sbjct: 250 SVSLATSNFVDDDDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNE 309

Query: 84  LIQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMHGIFGHTVSGIVIVGFSFFMFILR 143
           LIQLQL L  +  +I+++  I G   MN  C  YEMHG+F   V  +       F+ +L 
Sbjct: 310 LIQLQLTLTIASFAIAVETLIAGLFGMNIPCPLYEMHGVFNPFVGCVTAGCILLFLLVLG 369

Query: 144 YAKWKNLV 151
           YA+WK L+
Sbjct: 370 YARWKKLL 377


>GSVIVT01018104001 assembled CDS
          Length = 389

 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 5/94 (5%)

Query: 61  SVREYINVAEDNVNVQLDDERNELIQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMH 120
           ++REYI+  ED +N+QLD+ RN+LIQL+L L S  V +S+   + G   MN    W + H
Sbjct: 296 TLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAGIFGMNIPYTWNDDH 355

Query: 121 GIFGHTVSGIVIVGFS---FFMFILRYAKWKNLV 151
           G     V  +++ G S    F+ I+ YA+ K LV
Sbjct: 356 GFMFKWV--VIVTGVSCALLFVVIMSYARHKGLV 387


>GSVIVT01012222001 assembled CDS
          Length = 349

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 63/207 (30%)

Query: 1   VRDVIEHMLDDDEDMANLYLTRKLIQVQELEAMFGGA*HS-----NRTTTINAQAP---- 51
           VRD IEH++DDD DMA +YLT K    Q +EA      HS       T  + A AP    
Sbjct: 143 VRDEIEHLMDDDGDMAEMYLTEK---KQRMEAYPWNDLHSLSNVSGGTRVLPASAPVSPV 199

Query: 52  -------HLHR-----------------------------------------LGSKMSVR 63
                   L R                                         L   +S++
Sbjct: 200 ESISGSQRLQRAFSTIMNSSKHGSFTGSSNNGENIEQLEMLLEAYFVFIDNTLNKLLSLK 259

Query: 64  EYINVAEDNVNVQLDDERNELIQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMHGIF 123
           EYI+  ED +N++L + +N+LIQ +L+L ++    ++  A+ G   MNF+   ++    F
Sbjct: 260 EYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAAVTGVFGMNFTATIFDYPSAF 319

Query: 124 GH--TVSGIVIVGFSFFMFILRYAKWK 148
                ++G VI GF +F F+L +   K
Sbjct: 320 NWVLVITG-VICGFLYFSFLLYFRHKK 345


>GSVIVT01000746001 assembled CDS
          Length = 169

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 5/94 (5%)

Query: 61  SVREYINVAEDNVNVQLDDERNELIQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMH 120
           ++REYI+  ED +N+QLD+ RN+LIQL+L L S  V +S+   +     MN    W   H
Sbjct: 76  TLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAAIFGMNIPYTWRNDH 135

Query: 121 GIFGHTVSGIVIVGF---SFFMFILRYAKWKNLV 151
           G     V  +++ G    S F+ I+ YA+ K LV
Sbjct: 136 GYMFKWV--VILSGMACASIFLSIISYARSKGLV 167


>GSVIVT01015987001 assembled CDS
          Length = 354

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 51/202 (25%)

Query: 1   VRDVIEHMLDDDEDMANLYLTRKLIQVQEL----EAMFG-----GA*HSNRTTTINAQAP 51
           VRD IE ++DDD DMA +YLT K  +++      +++ G     GA   +   +  +  P
Sbjct: 151 VRDEIEQLMDDDGDMAEMYLTEKKRRMESSFYGEQSLMGYRSIDGALSVSAPVSPVSSPP 210

Query: 52  HLHRLGSKMSV------------------------------------------REYINVA 69
              RL   +SV                                          +EYI+  
Sbjct: 211 ETRRLEKSLSVTRSRHESMKSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDT 270

Query: 70  EDNVNVQLDDERNELIQLQLMLKSSVVSISLQLAICGALSMNFSCVWYEMHGIFGHTVSG 129
           ED +N+QLD+ RN+LIQ +L+L ++   +++   + G   MNF    ++  G F   +  
Sbjct: 271 EDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFDDPGAFKWVLII 330

Query: 130 IVIVGFSFFMFILRYAKWKNLV 151
             I G   F   + + K++ L+
Sbjct: 331 TGICGIIIFCSFVWFFKYRRLM 352