Jatropha Genome Database

JcCA0306681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306681.10 - phase: 1 /pseudo/partial
         (187 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010942001 assembled CDS                                       188   2e-48
GSVIVT01010940001 assembled CDS                                       186   6e-48
GSVIVT01020832001 assembled CDS                                       136   4e-33
GSVIVT01020831001 assembled CDS                                       122   1e-28
GSVIVT01027958001 assembled CDS                                       116   6e-27
GSVIVT01010939001 assembled CDS                                       111   2e-25
GSVIVT01035256001 assembled CDS                                       111   2e-25
GSVIVT01008725001 assembled CDS                                       103   4e-23
GSVIVT01035262001 assembled CDS                                       102   1e-22
GSVIVT01008804001 assembled CDS                                        50   8e-07

>GSVIVT01010942001 assembled CDS
          Length = 217

 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/122 (72%), Positives = 102/122 (83%)

Query: 66  MVKVWIEVESQRYNPAIAPIVYQLYVGPLKGVAPDEAIIDTNIEKLRKVLDIYEERLSCS 125
           +VKVW+EVESQ+Y+PAI  IVYQ +V PL+G   D+AIID N+EKL KVLD+YE RL  +
Sbjct: 96  LVKVWLEVESQQYHPAIYQIVYQFFVLPLQGKTADQAIIDVNLEKLGKVLDVYEARLGTT 155

Query: 126 KYLAGDFFSLADLHHLPYTYYLMKTSAASVINERPRVKAWWDDISSRPAFKKVAEGMNFG 185
           K LAGDF+SLADLHHL YTYY MKT  AS+IN RP VKAWW+DISSRPAFKKVAEGM FG
Sbjct: 156 KCLAGDFYSLADLHHLSYTYYFMKTPWASLINSRPNVKAWWEDISSRPAFKKVAEGMTFG 215

Query: 186 QK 187
           +K
Sbjct: 216 EK 217


>GSVIVT01010940001 assembled CDS
          Length = 217

 Score =  186 bits (472), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/122 (72%), Positives = 99/122 (81%)

Query: 66  MVKVWIEVESQRYNPAIAPIVYQLYVGPLKGVAPDEAIIDTNIEKLRKVLDIYEERLSCS 125
           +VKVW+EVESQ Y PAI  IVYQ +  PL+G   D+AIID N+EKL KVLD+YE RL  +
Sbjct: 96  LVKVWLEVESQHYYPAIYQIVYQFFALPLQGKTADQAIIDVNLEKLGKVLDVYEARLGTT 155

Query: 126 KYLAGDFFSLADLHHLPYTYYLMKTSAASVINERPRVKAWWDDISSRPAFKKVAEGMNFG 185
           K LAGDF+SLADLHHL YTYY MKT  AS+IN RP VKAWWDDISSRPAFKKVAEGM FG
Sbjct: 156 KCLAGDFYSLADLHHLSYTYYFMKTPWASLINSRPNVKAWWDDISSRPAFKKVAEGMTFG 215

Query: 186 QK 187
           +K
Sbjct: 216 EK 217


>GSVIVT01020832001 assembled CDS
          Length = 215

 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/113 (58%), Positives = 85/113 (75%)

Query: 66  MVKVWIEVESQRYNPAIAPIVYQLYVGPLKGVAPDEAIIDTNIEKLRKVLDIYEERLSCS 125
           +V+ W+EVE+Q Y+PAI  +V ++  G  +G+ PD  +I+ + +KL KVLDIYEERLS S
Sbjct: 94  VVEQWLEVEAQSYHPAIDNLVIEILFGRKRGIPPDAKVIEESEKKLAKVLDIYEERLSKS 153

Query: 126 KYLAGDFFSLADLHHLPYTYYLMKTSAASVINERPRVKAWWDDISSRPAFKKV 178
           KYLAGDFFSLADL HLP+T YL       +I ER  VKAWWDDIS+RP++KKV
Sbjct: 154 KYLAGDFFSLADLSHLPFTKYLADMGKMYLIEERKHVKAWWDDISNRPSWKKV 206


>GSVIVT01020831001 assembled CDS
          Length = 216

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 77/114 (67%)

Query: 67  VKVWIEVESQRYNPAIAPIVYQLYVGPLKGVAPDEAIIDTNIEKLRKVLDIYEERLSCSK 126
           V+ W+EVE+Q Y+P I  +V  +      G   D  +I+ + + L KVLDIYEERLS SK
Sbjct: 95  VEQWLEVEAQNYHPPIYNLVLHVLFSDKMGFPADAKVIEESEKNLGKVLDIYEERLSKSK 154

Query: 127 YLAGDFFSLADLHHLPYTYYLMKTSAASVINERPRVKAWWDDISSRPAFKKVAE 180
           YLAGDFFSLADL H+P+T YL       +I ER  V AWWDDISSRP++KKV E
Sbjct: 155 YLAGDFFSLADLSHIPFTNYLGAMGKMYLIKEREHVSAWWDDISSRPSWKKVLE 208


>GSVIVT01027958001 assembled CDS
          Length = 214

 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 77/113 (68%)

Query: 66  MVKVWIEVESQRYNPAIAPIVYQLYVGPLKGVAPDEAIIDTNIEKLRKVLDIYEERLSCS 125
           ++ VW+EVE+ +Y+P  A + ++L + P+ G+  D A ++    KL KVLD+YE RL+ S
Sbjct: 96  IMSVWMEVEAHQYDPHAAKLCFELCIKPMLGLTTDPAAVEDLEAKLGKVLDVYEARLTQS 155

Query: 126 KYLAGDFFSLADLHHLPYTYYLMKTSAASVINERPRVKAWWDDISSRPAFKKV 178
           KYL GD   LADLHHLP  +YL+ +SA  + + RP V AW  DI++RPA+ KV
Sbjct: 156 KYLGGDCLGLADLHHLPTLHYLLGSSAKKLFDSRPHVSAWVADITARPAWAKV 208


>GSVIVT01010939001 assembled CDS
          Length = 425

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 74/111 (66%)

Query: 70  WIEVESQRYNPAIAPIVYQLYVGPLKGVAPDEAIIDTNIEKLRKVLDIYEERLSCSKYLA 129
           WI+VE  +++P  + ++++L   P KG+  DE +++    KL KVLD+YEERLS S +L 
Sbjct: 308 WIDVEDHQFDPPASKLIWELVFKPQKGLPTDEGVVEEEEAKLVKVLDVYEERLSNSVFLG 367

Query: 130 GDFFSLADLHHLPYTYYLMKTSAASVINERPRVKAWWDDISSRPAFKKVAE 180
           GD F+ ADL H+P  Y LMKT    +  ERPRV+AW+  + SRP ++K+ E
Sbjct: 368 GDKFTSADLTHIPSLYLLMKTPVKRLFEERPRVRAWYRGVMSRPGWEKMVE 418



 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 71/114 (62%)

Query: 66  MVKVWIEVESQRYNPAIAPIVYQLYVGPLKGVAPDEAIIDTNIEKLRKVLDIYEERLSCS 125
           +V  WI+VE  ++ P    ++ +L   P  G+APD A++     +L KVLD+YE RL+  
Sbjct: 96  VVSNWIDVEDHKFEPPALELISELLTKPGNGLAPDLAVVAKAEAQLAKVLDVYEARLAEF 155

Query: 126 KYLAGDFFSLADLHHLPYTYYLMKTSAASVINERPRVKAWWDDISSRPAFKKVA 179
           KYLA D +++AD+ HLP    LM+T A  +I  R RV AW  DI +RPA+ KVA
Sbjct: 156 KYLAADNYTIADVLHLPNLQALMETPAKKLIESRARVSAWCSDILARPAWAKVA 209


>GSVIVT01035256001 assembled CDS
          Length = 213

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 77/116 (66%), Gaps = 1/116 (0%)

Query: 66  MVKVWIEVESQRYNPAIAPIVYQLYVGPLKGVAPDEAIIDTNIEKLRKVLDIYEERLSCS 125
           +V  W+EVE+  +N  +  +V QL + P  G   D A+  T  +KL KV D+YE+RLS S
Sbjct: 95  VVDQWLEVEAHNFNELVYTLVMQLVILPRMGERGDLALAHTCEQKLEKVFDVYEQRLSKS 154

Query: 126 KYLAGDFFSLADLHHLPYTYYLMKTSA-ASVINERPRVKAWWDDISSRPAFKKVAE 180
           +YLAGD F+LADL HLP   YL+K +  A ++ ER  V AWW+DIS+R A+KKV E
Sbjct: 155 RYLAGDSFTLADLSHLPAIRYLVKEAGMAHLVTERKSVSAWWEDISNRAAWKKVME 210


>GSVIVT01008725001 assembled CDS
          Length = 223

 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 1/115 (0%)

Query: 67  VKVWIEVESQRYNPAIAPIVYQLYVGPLKGVAPDEAIIDTNIEKLRKVLDIYEERLSCSK 126
           ++ W+E E Q +NP  + +V+QL   P   +  D  +I  + EKL KVLD+YE+RL  S+
Sbjct: 99  IEQWLEAEGQSFNPPSSALVFQLAFAPRMKLKQDLGVIKQSEEKLAKVLDVYEQRLGESR 158

Query: 127 YLAGDFFSLADLHHLPYTYYLMK-TSAASVINERPRVKAWWDDISSRPAFKKVAE 180
           +LAGD F+LADL HLP T YL+  T    +  +R  V  WW +IS R ++KKV +
Sbjct: 159 FLAGDEFTLADLSHLPNTQYLVSVTEKGEMFTKRKNVGRWWSEISGRDSWKKVVD 213


>GSVIVT01035262001 assembled CDS
          Length = 213

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 69/114 (60%), Gaps = 1/114 (0%)

Query: 66  MVKVWIEVESQRYNPAIAPIVYQLYVGPLKGVAPDEAIIDTNIEKLRKVLDIYEERLSCS 125
           +V  W+EVE    NP I  +V QL + P  G   D  ++    +KL KV D YE+RLS S
Sbjct: 95  LVDQWLEVEENNLNPLIFTVVLQLVILPRMGEKGDLTLVRNCEQKLDKVFDAYEQRLSKS 154

Query: 126 KYLAGDFFSLADLHHLPYTYYLM-KTSAASVINERPRVKAWWDDISSRPAFKKV 178
            YL GD F+LADL HLP   YL+ +     +I ER  V AWW++IS+ PA+KKV
Sbjct: 155 SYLGGDSFTLADLSHLPGIRYLVNEVGIGHLITERKNVSAWWENISNMPAWKKV 208


>GSVIVT01008804001 assembled CDS
          Length = 267

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 100 DEAIIDTNIEKLRKVLDIYEERLSCSKYLAGDFFSLADLHHLP-YTYYLMKTSAASVINE 158
           D  ++  + E+L ++LD  E +L+ S YLAGD F++AD+  +P     ++       I  
Sbjct: 158 DPDVLKQSKEQLAEILDEVERKLNESTYLAGDEFTMADVMLIPVLARIVLLDLEEEYICS 217

Query: 159 RPRVKAWWDDISSRPAFKKV 178
           RP +  +W+ +  RP++KKV
Sbjct: 218 RPNIAEYWNLVQQRPSYKKV 237