Jatropha Genome Database

JcCA0306451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306451.20 - phase: 0 
         (115 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035016001 assembled CDS                                       150   9e-38

>GSVIVT01035016001 assembled CDS
          Length = 114

 Score =  150 bits (380), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 73/80 (91%)

Query: 36  QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
           QE A+NNCVYRNE+HHSV ERTQVLQDVAADPTLPRTK+V C  C H EAVFFQATARGE
Sbjct: 35  QEVAENNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKSVRCAQCNHGEAVFFQATARGE 94

Query: 96  EGMTLFFVCCNPNCGHRWRE 115
           EGMTLFFVCCNPNCG+RWR+
Sbjct: 95  EGMTLFFVCCNPNCGYRWRD 114