Jatropha Genome Database

JcCA0306451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0306451.10 + phase: 0 /pseudo/partial
         (1182 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035014001 assembled CDS                                       574   e-164
GSVIVT01028117001 assembled CDS                                       475   e-134

>GSVIVT01035014001 assembled CDS
          Length = 1569

 Score =  574 bits (1479), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 303/542 (55%), Positives = 367/542 (67%), Gaps = 46/542 (8%)

Query: 661  RMISRESSENQGNEGSCILPASLAENTDTPVLEVPKNERTNRTTP----------VNEGD 710
            R++    S+       CI      ENT     E  KN   +R +P           NE  
Sbjct: 1054 RVVEPMPSDTDARSRQCIDGHDATENTINGFQEPEKN--YDRISPHSEIKYHHSSFNECM 1111

Query: 711  EFQEPNAQVDKISMPLLNDTIGSNT-------HPKKMFNVVYRRSKLS-KDRANSEGDSG 762
             + EP  QV+ ++     DT  S+        HP  +       +KL  + +   E    
Sbjct: 1112 NYDEPPKQVNMVA----GDTAASSVQHSNGTDHPPHLKESSTSSTKLRIRSKKILEDPEI 1167

Query: 763  TREGVSHASADEQYTGCILHEDITDGPHRTDITGSKATTDDLMNCNIKLGQEHDSDDVCR 822
              +    +S ++   G   HE  TDG  RT                 +LG  H S+D  +
Sbjct: 1168 PSDPKIKSSVEDWSNGMDFHEATTDGARRT-----------------RLG--HGSEDTLK 1208

Query: 823  NADNGSISSRCQLPSEEWGSSSRMTVGLRSSRNRRTSYHFRDASP--VDRRKANQSGKKV 880
            + D  S++   +LP EEW SSSRMTVGLRS+RNRR SYH RD SP  ++RRK +QS KKV
Sbjct: 1209 SVDKFSVNRSDELPCEEWMSSSRMTVGLRSARNRRASYHVRDTSPSPMERRKPHQSSKKV 1268

Query: 881  SWLMLSKHEEGSRYIPQQGDEVVYFRQGHQEYIDYIGSRETGPWKSVKGHIRAVEFCKLE 940
            SWLMLS H E  RYIPQ GDEVVY RQGHQEYI Y GS E GPW SVKG IRAVEFCK+E
Sbjct: 1269 SWLMLSMHVE-PRYIPQLGDEVVYLRQGHQEYITYSGSHEAGPWTSVKGIIRAVEFCKVE 1327

Query: 941  ALEYSTLPGSGDSCCKMTLKFVDSTSDVCQKSFKLTLPEVTGFPDFLVERTRFDAAMRRN 1000
             LEYS   GSGDSCCKMTL+FVD TS V  K+FKLTLPEVT FPDFLVERTR+DAA++RN
Sbjct: 1328 GLEYSPFAGSGDSCCKMTLQFVDPTSHVFGKTFKLTLPEVTSFPDFLVERTRYDAAIQRN 1387

Query: 1001 WTCRDKCRVYWKNDGEGDGSWWEGRILSVKAKTSEFPDSPWERYTIQYRSDPRETHQHSP 1060
            WT RDKCRV+WKN+GE DGSWW+GRILSVKA++ EFPDSPW+RY I+YRS+P ETH HSP
Sbjct: 1388 WTSRDKCRVWWKNEGEEDGSWWDGRILSVKARSPEFPDSPWDRYVIRYRSEPTETHLHSP 1447

Query: 1061 WELFDFDSQWEQPHIDDEIRNKLISAFAKLEQSGNTEQDRYGIQKLRQVSQKTNFTNRYP 1120
            WEL+D  +QWEQPHIDDE RNKL+S+ AKLEQSG+  QD YGIQKL+QVSQK+NF NR+P
Sbjct: 1448 WELYDIGTQWEQPHIDDESRNKLLSSLAKLEQSGDKPQDYYGIQKLKQVSQKSNFLNRFP 1507

Query: 1121 VPLSLEVIQSRLENYYYRTLEAVKHDIEVMLTNSESYFIKNLELSGKMKRLSGWFKKTLS 1180
            VPLSLEVIQSRL+N YYR++EAVKHD++VML+N+E+YF+KN ELS K++RLS WF + LS
Sbjct: 1508 VPLSLEVIQSRLKNQYYRSMEAVKHDVKVMLSNAETYFVKNAELSMKVRRLSEWFTRMLS 1567

Query: 1181 SL 1182
            S+
Sbjct: 1568 SI 1569



 Score =  551 bits (1420), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 323/589 (54%), Positives = 392/589 (66%), Gaps = 84/589 (14%)

Query: 96   DGTSIILSDDVGQLYILNTGQGESQQDAKYDQFFLGDYRPLMQDTYGNIIDQETQLVPYR 155
            DGTSIILSDDVGQLYIL+TGQGESQ+DA YDQFFLGDYRPL+QDTYGN++DQETQL PYR
Sbjct: 636  DGTSIILSDDVGQLYILSTGQGESQKDAMYDQFFLGDYRPLIQDTYGNVLDQETQLAPYR 695

Query: 156  RNMQDLLCDSGMNPYPEPYQSMYQKRRLGALNMEWKPPSIKLTVVPDFSLDPDFQMLPLA 215
            RNMQDLLCD+ M PYPEPYQSMYQ+RRLGAL +EW+P S++L V PDF+LD D+QMLPL 
Sbjct: 696  RNMQDLLCDATMIPYPEPYQSMYQQRRLGALGIEWRPSSLRLAVGPDFNLDQDYQMLPLP 755

Query: 216  DLDVLVEPLPEFVDAMDWEPENEVQSEDSDSEYNVPEEYSTGGEQGSLNSSSSVDRECSA 275
            DLDVL++PLPEF+D MDWEPENEVQ++D+DSEYNV EEYSTGGEQGSL+S+SS D ECSA
Sbjct: 756  DLDVLIDPLPEFIDVMDWEPENEVQTDDTDSEYNVTEEYSTGGEQGSLSSNSSGDPECSA 815

Query: 276  EDSEVEG--RNGFHRSKRKKSKAEIEIMTSSGRRVKRRNLDECDGNTLRTNRTRKSRIGC 333
            EDS+VE   ++G  RSKRKK KAE EIMT SGRRVKRRNLDE DGN+LR+NRTRKSR G 
Sbjct: 816  EDSDVENSHKDGLRRSKRKKQKAETEIMTFSGRRVKRRNLDEFDGNSLRSNRTRKSRSGR 875

Query: 334  KASKRKSSTSKGFRPQRAAARNALTLFSKITGAATDGXXXXXXXXXXXXXXXXLQNSDIQ 393
            K S + SS SK  RPQRAAARNALTLFS++ G +TDG                L++S+I+
Sbjct: 876  KVSHKNSSKSKSLRPQRAAARNALTLFSRMKGTSTDGEDEDGSEGDLSESESSLEDSNIE 935

Query: 394  SDESEKSLQNERNKHLKGKEVPLEDNEDFVKSHE--QSHLNAGNRGKLVLKLPVRNSNKF 451
            SDES+ SLQNE+ KH KGKEV L++ ED  K HE  +S +NAGNR +LVLK P+R+SN+ 
Sbjct: 936  SDESDGSLQNEQCKHSKGKEVSLDEFEDMDKQHEHPESCMNAGNRRRLVLKFPIRDSNRL 995

Query: 452  VVSETKTTNHQIDVGPSSCKAPTEASNVNRVHIRSVDLERSSSYTNGTAVKAKERGQTDS 511
            +++      +Q D+  SS KAP EAS                           ERGQ + 
Sbjct: 996  LLA----PENQADLVGSSSKAPQEAS---------------------------ERGQPEK 1024

Query: 512  Y-----MSEGYRNEDIKWGGVKARTSKRQRFGEAMSSAAYARFGLCFSDRRERESNLNGH 566
                  + EGY++  I+WGGVKARTSKR R  E M S   AR   C          ++GH
Sbjct: 1025 IEDHLDLFEGYKDGKIRWGGVKARTSKRLRVVEPMPSDTDARSRQC----------IDGH 1074

Query: 567  VKSQNTCGTSSSAEVQDYAADNTNEVGATGREDTAADTSDVVNTMTNGKEHLNFNECMDS 626
              ++NT       E ++Y              D  +  S++         H +FNECM+ 
Sbjct: 1075 DATENTINGFQEPE-KNY--------------DRISPHSEI------KYHHSSFNECMNY 1113

Query: 627  DELP-----MVGHTA-------NGNDSSLEFKESNIPISTKLRIKSRMI 663
            DE P     + G TA       NG D     KES+   STKLRI+S+ I
Sbjct: 1114 DEPPKQVNMVAGDTAASSVQHSNGTDHPPHLKESSTS-STKLRIRSKKI 1161


>GSVIVT01028117001 assembled CDS
          Length = 1549

 Score =  475 bits (1223), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 255/447 (57%), Positives = 318/447 (71%), Gaps = 8/447 (1%)

Query: 738  KKMFNVVYRRSKLSKDRANSEGDSGTREGVSHASADEQY-TGCILHEDITDGPHRTDITG 796
            K+ ++ V++R+K    R N+EG  G+ E  +  + +  Y +G   HE  TD  HRT    
Sbjct: 1109 KQNYDAVHKRAKSYMARTNAEGYGGSMEESASNAGNYNYDSGIDFHEATTDAVHRTRSMV 1168

Query: 797  SKATTDDLMNCNIKLGQEHDSDDVCRNADNGSISSRCQLPSEEWGSSSRMTVGLRSSRNR 856
               T+ +  N   +       ++  +NA+N S  +R QL SEEW SSSRM V  RS+R R
Sbjct: 1169 RDTTSQEPNNVMSRFKVR---EETSKNAENYSKKTRDQLQSEEWMSSSRMRVRSRSTRYR 1225

Query: 857  RTSYHFRDASPVDRRKANQSGKKVSWLMLSKHEEGSRYIPQQGDEVVYFRQGHQEYIDYI 916
            R  Y     SP   R +N SG+KVSWLMLS+HEEG RYIPQQGDEVVY RQGHQEYI+ +
Sbjct: 1226 RGDYD-NYLSPSAGRISNFSGRKVSWLMLSEHEEGYRYIPQQGDEVVYLRQGHQEYIEKL 1284

Query: 917  GSR-ETGPWKSVKGHIRAVEFCKLEALEYSTLPGSGDSCCKMTLKFVDSTSDVCQKSFKL 975
              R E GPW+S K +IRAVE C +E L Y++L GSGDSCCK+TLKF D  S V  ++FKL
Sbjct: 1285 NLRSEVGPWRSPKTNIRAVEICSVEDLVYASLAGSGDSCCKITLKFTDPLSSVFGRTFKL 1344

Query: 976  TLPEVTGFPDFLVERTRFDAAMRRNWTCRDKCRVYWKNDGEGDGSWWEGRILSVKAKTSE 1035
            TLPE+  F DF+VE+TR+DAA+ RNWT RDKC V+W+N  +G GSWWEGRIL+V+AK+ E
Sbjct: 1345 TLPELINFSDFVVEKTRYDAAIGRNWTHRDKCLVWWRNGEDGGGSWWEGRILAVEAKSRE 1404

Query: 1036 FPDSPWERYTIQYRSDPRETHQHSPWELFDFDSQWEQPHIDDEIRNKLISAFAKLEQSGN 1095
            FPDSPWERY ++Y+ D  E + HSPWEL D D QWEQP ID EIR+KL+S+FAKLE S +
Sbjct: 1405 FPDSPWERYVVKYKGDA-ENNLHSPWELHDPDIQWEQPQIDFEIRDKLLSSFAKLE-SAH 1462

Query: 1096 TEQDRYGIQKLRQVSQKTNFTNRYPVPLSLEVIQSRLENYYYRTLEAVKHDIEVMLTNSE 1155
              QD YGIQK  QV+QK +F NR+PVPL  E+IQ+RLEN YYRTLEAVKHDI VML+N++
Sbjct: 1463 KIQDYYGIQKFNQVAQKLDFLNRFPVPLYPELIQARLENNYYRTLEAVKHDIMVMLSNAQ 1522

Query: 1156 SYFIKNLELSGKMKRLSGWFKKTLSSL 1182
            SYF +N ELS KMKRLS WF +TLS L
Sbjct: 1523 SYFGRNAELSSKMKRLSDWFTRTLSKL 1549



 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/475 (49%), Positives = 310/475 (65%), Gaps = 49/475 (10%)

Query: 96   DGTSIILSDDVGQLYILNTGQGESQQDAKYDQFFLGDYRPLMQDTYGNIIDQETQLVPYR 155
            DGTSI+LSDDVGQ+Y+LNTGQGESQ+DAKYDQFFLGDYRPL++DT GN++DQETQL P+R
Sbjct: 640  DGTSIVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDTIGNVLDQETQLAPHR 699

Query: 156  RNMQDLLCDSGMNPYPEPYQSMYQKRRLGALNMEWKPPSIKLTVVPDFSLDPDFQMLPLA 215
            RN+QD LCDS M PY EPYQ+MYQ+RRLGAL +EW P SI L V PDFSL  ++QM PLA
Sbjct: 700  RNIQDPLCDSSMIPYSEPYQTMYQQRRLGALGIEWHPSSINLAVGPDFSLGQEYQMPPLA 759

Query: 216  DLDVLVEPLPEFVDAMDWEPENEVQSEDSDSEYNVPEEYSTGGEQGSLNSSSSV-DRECS 274
            DLD ++EPLPE VDA+ WEPENEV S+D+DSEYN+ EEYS+ GE GSL+++SS  D ECS
Sbjct: 760  DLDRVMEPLPELVDAVYWEPENEVISDDTDSEYNIAEEYSSEGEHGSLSAASSFSDPECS 819

Query: 275  AEDSEVE--GRNGFHRSKRKKSKAEIEIMTSSGRRVKRRNLDECDGNTLRTNRTRKSRIG 332
            AED++VE   ++G  RS+RKK ++E+EIMTSSGRRVKRRNL+ECDG + R+ RT+KS+ G
Sbjct: 820  AEDTDVEHSHKDGLRRSRRKKYRSEVEIMTSSGRRVKRRNLNECDGTSSRS-RTKKSKNG 878

Query: 333  CKASKRKSSTSKGFRPQRAAARNALTLFSKITGAATDGXXXXXXXXXXXXXXXXLQNSDI 392
             K SKR SS  +  RPQRAA RNAL +FS+IT  +T+G                  + + 
Sbjct: 879  RKVSKRNSSKIQSLRPQRAAKRNALNMFSQITETSTEG-----------------DDEEG 921

Query: 393  QSDESEKSLQNERNKHLKGKEVPLEDNEDFVKSHEQSHLNAGNRGKLVLKLPVRNSNKFV 452
              D+S  S Q+  N+     + P            +S  NAGNR +LVLK  +R+S K +
Sbjct: 922  LEDDSSGSEQSSLNEFENAIKFP------------ESQSNAGNRRRLVLKFSLRDSKKSI 969

Query: 453  VSETK--TTNHQIDVGPSSCKAP---TEASNVNRV-------HIRSVDLERSSSYTNGTA 500
             SE      N Q D+  S  + P    E    N +        + + DLE+S ++     
Sbjct: 970  PSEDTRPKCNTQADIVHSPSRPPPKTVEEKETNLISEDPESSSMHAADLEQSQNHNRDDF 1029

Query: 501  VKAKERGQTDSYM--SEGYRNEDIKWGGVK--ARTSKRQRFGEAMSSAAYARFGL 551
            +      +T+ ++  S GY++  I+WG  K   + ++    GEA  S+++    L
Sbjct: 1030 IHKPRSEETEDHLDTSAGYKDNKIRWGENKDDVKNNELAPPGEANKSSSFQGLSL 1084