Jatropha Genome Database

JcCA0305711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305711.10 + phase: 0 
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037851001 assembled CDS                                       101   3e-22
GSVIVT01016182001 assembled CDS                                        69   3e-12
GSVIVT01014844001 assembled CDS                                        67   6e-12
GSVIVT01012197001 assembled CDS                                        64   7e-11
GSVIVT01031461001 assembled CDS                                        63   1e-10
GSVIVT01018162001 assembled CDS                                        58   5e-09
GSVIVT01011505001 assembled CDS                                        55   3e-08
GSVIVT01033678001 assembled CDS                                        54   5e-08

>GSVIVT01037851001 assembled CDS
          Length = 161

 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 72/106 (67%), Gaps = 19/106 (17%)

Query: 1  MALEALNSPTTATP-FNYEDT-------WTKRKRSKRPRGESPPTEEEYLALCLIMLARG 52
          MALEALNSPTT +P F +E+        WTKRKRS+RPR E+P TEEEYLALCLIMLARG
Sbjct: 1  MALEALNSPTTMSPTFKFEEAELHSLEPWTKRKRSRRPRFENPSTEEEYLALCLIMLARG 60

Query: 53 GSTSPTAEEIASTSXXXXXXXALNLSYKCTVCNKAFPSYQALGGHK 98
          G+T  T EE                +++C++C++ FP+ QALGGHK
Sbjct: 61 GAT--TREEPQGQPPE---------THECSICHRTFPTGQALGGHK 95



 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 42/88 (47%), Gaps = 37/88 (42%)

Query: 139 HECSICHKTFPTGQALGGHKRRHYEGPVGGHNHSSSAVTXXXXXXXXXXXXXXXXFEFDL 198
           HECSICH+TFPTGQALGGHKR HY+G        SS VT                     
Sbjct: 76  HECSICHRTFPTGQALGGHKRCHYDG-------GSSGVTQTGV----------------- 111

Query: 199 NLPALPELWPGNREQEVESPLPGKKPRL 226
                        EQEVESPLP KKPR 
Sbjct: 112 -------------EQEVESPLPAKKPRF 126


>GSVIVT01016182001 assembled CDS
          Length = 353

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 53/127 (41%), Gaps = 23/127 (18%)

Query: 38  EEEYLALCLIMLARGGSTSPTAEEIASTSXXXXXXXALN---LSYKCTVCNKAFPSYQAL 94
           E+E LA CLI+LA+G S   +  E    S              +Y+C  CN+ FPS+QAL
Sbjct: 131 EDEDLANCLILLAQGQSREESKVEDGGGSVAAAATATAKAGFYAYECKTCNRTFPSFQAL 190

Query: 95  GGHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKTFPTGQAL 154
           GGH+                                        HECSIC   F +GQAL
Sbjct: 191 GGHR--------------------ASHKKPKARAFNSSSSKSRIHECSICGAEFTSGQAL 230

Query: 155 GGHKRRH 161
           GGH RRH
Sbjct: 231 GGHMRRH 237


>GSVIVT01014844001 assembled CDS
          Length = 461

 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 53/128 (41%), Gaps = 10/128 (7%)

Query: 79  YKCTVCNKAFPSYQALGGHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 138
           Y+C+ CNK+FP++QALGGH+                                        
Sbjct: 320 YRCSTCNKSFPTHQALGGHRSSHNKFKNSQTMDDSASHEALGCNDAAAALASMLSTT--- 376

Query: 139 HECSICHKTFPTGQALGGHKRRHYEGPVGGHNHSSSAVTXXXXXXXXXXXXXXXXFEFDL 198
           H+C  C+KTFPTGQALGGH R H+ GP      S +  +                  FDL
Sbjct: 377 HQCKCCNKTFPTGQALGGHMRCHWNGP------SEAPSSQVTSPGEASQTGPKLLLGFDL 430

Query: 199 N-LPALPE 205
           N LPA+ E
Sbjct: 431 NELPAMDE 438


>GSVIVT01012197001 assembled CDS
          Length = 554

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 62/158 (39%), Gaps = 10/158 (6%)

Query: 25  KRSKRPRGESPPTEEEYLALCLIMLAR-----GGSTSP-TAEEIASTSXXXXXXXALNLS 78
           K+    + E+ P E++ LA+CL+ML+R     GG  S     + A               
Sbjct: 320 KKESGSQQENKPQEQQELAICLMMLSRDSGHWGGLNSLYDLSKRAKNDSYSEENVRKRSK 379

Query: 79  YKCTVCNKAFPSYQALGGHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 138
           Y+C  CNK F S+QALGGH+                                        
Sbjct: 380 YQCLTCNKTFHSHQALGGHR----ANHKRKLARFGSGKTPIAQDLSGKAEKKIGSRKSNG 435

Query: 139 HECSICHKTFPTGQALGGHKRRHYEGPVGGHNHSSSAV 176
           H C IC K F +GQALGGHK+ H+ G     N  +  +
Sbjct: 436 HMCPICFKVFRSGQALGGHKKSHFVGVCEDENSRTLVI 473


>GSVIVT01031461001 assembled CDS
          Length = 228

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 57/133 (42%), Gaps = 26/133 (19%)

Query: 42  LALCLIMLARG---------GS----TSPTAEEIASTSXXXXXXXALNLSYKCTVCNKAF 88
           +A CLI+LA+G         G+    +SP+  E+A+T+            Y+C  CN+ F
Sbjct: 37  MANCLILLAQGLGPRQIEEGGAVEKLSSPSFTEMATTTAGKAGFYV----YECKTCNRTF 92

Query: 89  PSYQALGGHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKTF 148
           PS+QALGGH+                                        HECSIC   F
Sbjct: 93  PSFQALGGHR---------ASHKKPKAISPPLSLQIGNNKALHSSNKSKVHECSICGSEF 143

Query: 149 PTGQALGGHKRRH 161
            +GQALGGH RRH
Sbjct: 144 SSGQALGGHMRRH 156


>GSVIVT01018162001 assembled CDS
          Length = 399

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 48  MLARGGSTSPTAEEIASTSXXXXXXXALNLSYKCTVCNKAFPSYQALGGHKXXXXXXXXX 107
            L  G   S  AE + S+        +    ++C  C K F S+QALGGH+         
Sbjct: 119 FLEHGKCNSDDAESLVSSPGSDGEDESW--MFECKACKKVFNSHQALGGHRASHKKVKGC 176

Query: 108 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHECSICHKTFPTGQALGGHKRRHY 162
                                          HECSICH+ F +GQALGGHKR H+
Sbjct: 177 FAARLDHMDESLADEDVITHDEFSRKSKV--HECSICHRVFSSGQALGGHKRCHW 229


>GSVIVT01011505001 assembled CDS
          Length = 692

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 48/146 (32%), Gaps = 28/146 (19%)

Query: 79  YKCTVCNKAFPSYQALGGHKXXXXXXXXXXXXXXXXXXX-------------------XX 119
           YKC++C+K F S++ LGGH+                                        
Sbjct: 268 YKCSICSKIFQSHRVLGGHRMRCLASKSKSCGKSIQTNKILPDGKANSKLEKREYNENSI 327

Query: 120 XXXXXXXXXXXXXXXXXXXHECSICHKTFPTGQALGGHKRRHYEGPVGGHNHSSSAVTXX 179
                              +EC IC K F +GQALGGHKR HY G         S+ T  
Sbjct: 328 GQEAARVSGMNCELKRSKDYECEICFKVFASGQALGGHKRAHYAG---------SSETGE 378

Query: 180 XXXXXXXXXXXXXXFEFDLNLPALPE 205
                           FDLNLP  PE
Sbjct: 379 EGTTLVQQEHSDVSDIFDLNLPIAPE 404


>GSVIVT01033678001 assembled CDS
          Length = 232

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 52/136 (38%), Gaps = 16/136 (11%)

Query: 42  LALCLIMLARGGSTSPTAEEIASTSXXXXXXXALNLSYKCTVCNKAFPSYQALGGHKXXX 101
           +A CLI+LA+G S        A+TS            Y+C  C + FPS+QALGGH+   
Sbjct: 60  MANCLILLAQGQSRKVAVPAAAATSSKATGFYV----YQCKTCYRCFPSFQALGGHRASH 115

Query: 102 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXXXXHECSICHKTFPTG 151
                                                          HECSIC   F +G
Sbjct: 116 KRPKAVTEEKRTWALMEDEYDQFNHNSTALSLQIPNRGLYSNNKSKVHECSICGAEFSSG 175

Query: 152 QALGGHKRRH--YEGP 165
           QALGGH RRH  + GP
Sbjct: 176 QALGGHMRRHRTFTGP 191