Jatropha Genome Database

JcCA0305691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305691.10 + phase: 0 /partial
         (218 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036079001 assembled CDS                                        91   5e-19

>GSVIVT01036079001 assembled CDS
          Length = 446

 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/112 (47%), Positives = 71/112 (63%), Gaps = 2/112 (1%)

Query: 108 KKDVQVKGNDKNTVEKQRKSKKSTEKLDELDAIDNGETSFADFFSVNYVESSKHSVEKKL 167
           KK V +   D   VE++   K    +   L AID+GET F + F+    E+SK+SVE + 
Sbjct: 335 KKKVPILKEDHTMVERELNKKARKVERGGLSAIDDGETPFMELFAAETAENSKYSVEDR- 393

Query: 168 IDKAGENINSTGGLVTLSAKKKKTKNRVANHAVQLPA-EVEVGMGGPSTWDD 218
            DKA ++ NS GG V+L AKKKKTK R  + ++QL +  VEVG+GGPSTWDD
Sbjct: 394 TDKAFQDSNSAGGSVSLGAKKKKTKRRGISPSIQLLSLPVEVGLGGPSTWDD 445