Jatropha Genome Database

JcCA0305451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305451.10 - phase: 0 /pseudo/partial
         (664 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016717001 assembled CDS                                       636   0.0  

>GSVIVT01016717001 assembled CDS
          Length = 895

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 288/350 (82%), Positives = 323/350 (92%)

Query: 1   VRGSHVGTYLPNSGIWHHTQRLLKKGASNTNTVHHLDFDAPTREHAHQLPDDKKQDESLL 60
           VRGSHVGTYLP+SGIWHHTQR LKKG SN+NTVHHLDFDAPTREHA  LPDDKKQDESLL
Sbjct: 73  VRGSHVGTYLPSSGIWHHTQRFLKKGVSNSNTVHHLDFDAPTREHAPLLPDDKKQDESLL 132

Query: 61  EDVWTLLRAGRLEEACDLCRSAGQPWRAATLCPFGGLDLAPSIEALVKNGKNRTLQAIEL 120
           EDVWTLLRAGRLEEACDLCRSAGQPWRAATLCPFGGLD  PSIE+L+KNGKNRTLQAIEL
Sbjct: 133 EDVWTLLRAGRLEEACDLCRSAGQPWRAATLCPFGGLDQFPSIESLMKNGKNRTLQAIEL 192

Query: 121 ESGIGQQWRLWKWASFCASEKIAEQNGGKYEVAVYASQCSDLKRMLPICTDWESACWAMA 180
           ESGIG QWRLWKWAS+CASE+I+EQ+GGKYE AVYA+QCS+LKRMLPIC +WESACWAMA
Sbjct: 193 ESGIGNQWRLWKWASYCASERISEQDGGKYETAVYAAQCSNLKRMLPICMNWESACWAMA 252

Query: 181 KSWLDVQVDLELARSQPGRIEQLKSYGDDIDGSPGQIDSASHPSIGPEGWPLHVLNQQPR 240
           KSWLD+QVDLELAR +PG  +Q K+YGD +DGSPG+ DS S  S+GPE WP  VLNQQPR
Sbjct: 253 KSWLDIQVDLELARLRPGGTDQFKNYGDIVDGSPGEGDSESQSSVGPENWPFQVLNQQPR 312

Query: 241 DFSALLQKLHSGETINEAVARGCKEQQRQIEMDLMLGNIPHLLDMIWAWITPSEDDQNVF 300
             SALLQKLHSG+T++EAV RGCKEQ RQIEM+LM+G+IPHL+D++W+WI+PSEDDQNVF
Sbjct: 313 QLSALLQKLHSGDTVHEAVTRGCKEQHRQIEMNLMVGDIPHLVDLLWSWISPSEDDQNVF 372

Query: 301 RPHGDPQMIRFGAHLVLVLRYLLAEEMKDSFREKLMNVGDLILHMYVMFL 350
           RPHGDPQMIRFGAHLVLVLRYLLA++MKDSF+EK+M +GDLI+HMY MFL
Sbjct: 373 RPHGDPQMIRFGAHLVLVLRYLLADQMKDSFKEKIMAIGDLIVHMYAMFL 422



 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/246 (76%), Positives = 206/246 (83%), Gaps = 1/246 (0%)

Query: 420 STITNVKDVSVKLLLRALMHSNILFREFSLISMWRIPAMPIGAHTLLSLLAEPLKQLSEI 479
           STIT+ K VSVKLLLRAL+HSNILFREFSLISMWR+PAMP+GAHTLLS LAEPLKQ  E 
Sbjct: 534 STITDAKAVSVKLLLRALIHSNILFREFSLISMWRVPAMPVGAHTLLSFLAEPLKQPPET 593

Query: 480 PDTLEDY-FSENLKEFQDWSEYYSCDATYRNWLKIELENAEVPPFELSMXXXXXXXXXXX 538
               E+Y  +ENLKEFQDWSEYYSCDATYRNWLKIE E AEVPP ELS+           
Sbjct: 594 LHAFEEYNVAENLKEFQDWSEYYSCDATYRNWLKIESEIAEVPPLELSLEERQRAIAAAK 653

Query: 539 XXLNSSLSLLLRKENPWLTPVEDQAYESAAPTFLELHATAMLCLPSGECMCPDATICTAL 598
             LNSSLSLLLRKENPWL   E+  YES  P FLELHATAMLCLPSGECMCPDAT+CT L
Sbjct: 654 ETLNSSLSLLLRKENPWLVSDENNIYESMEPVFLELHATAMLCLPSGECMCPDATLCTTL 713

Query: 599 MSALYSSVSEEIVLHRQLMVNVALSPRDNYCIEVVLRCLAVDGDGLGSHQANDGGILGTV 658
           +SALYSSVSEEIVL+RQLMVNV++SPRDNYCIE V+RCLAV+GDGLGSH+  DGG+LGTV
Sbjct: 714 ISALYSSVSEEIVLNRQLMVNVSISPRDNYCIEFVVRCLAVEGDGLGSHELCDGGVLGTV 773

Query: 659 MAAGFK 664
           MAAGFK
Sbjct: 774 MAAGFK 779