Jatropha Genome Database

JcCA0305301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0305301.10 + phase: 0 
         (282 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028311001 assembled CDS                                       339   9e-94
GSVIVT01005618001 assembled CDS                                       267   4e-72
GSVIVT01024746001 assembled CDS                                       122   2e-28

>GSVIVT01028311001 assembled CDS
          Length = 269

 Score =  339 bits (869), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 164/271 (60%), Positives = 201/271 (74%), Gaps = 18/271 (6%)

Query: 11  LASSLRNCLFSVLSVGPIPCHLAFIMDGNRRFAKKQKQGVVTGYRAGFTALMSIIKYCSE 70
           L + LR C+FSVLSVGPIP H+AFIMDGNRRFAKKQ      G++ G+ ALMS+++Y  E
Sbjct: 16  LGTFLRKCIFSVLSVGPIPNHIAFIMDGNRRFAKKQNLIEGAGHKVGYLALMSMLRYSYE 75

Query: 71  LGVKYVTIYAFSIDNFRREPEEVKIIMDLMLEKTEGILKEESVVHQYGVRVYFLGNLKLL 130
           LGVKYVTIYAFSI+NF+R PEEV+ +MDLM EK E ++ EES+++ +GVRV+F+GNLKLL
Sbjct: 76  LGVKYVTIYAFSIENFKRRPEEVQSVMDLMQEKIEQLINEESILNHFGVRVHFIGNLKLL 135

Query: 131 CEPLRVAAEKVMKATASNTKLLLFICVAYTSLDEIIHAVHESCNDKLKNIILPDKPHTDX 190
             P+R+AAE+ M  TA N+K +L ICVAYTS +EI+HAV ESC  K   I        D 
Sbjct: 136 SAPVRLAAERAMLVTACNSKAVLSICVAYTSTNEIMHAVEESCVKKWDEIRELKASGVDY 195

Query: 191 XXXXXXXXXXKDGIKLVDIEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPD 250
                             IEKH+YMA+ P+PD+LIRTSGE+RLSNFLLWQ+ +C LYSP 
Sbjct: 196 ------------------IEKHLYMAVAPDPDILIRTSGETRLSNFLLWQSQYCYLYSPS 237

Query: 251 ALWPEIGLWNLVWAVLNFQRNHSYLEKKKKQ 281
            LWPEIG W+L+WAVLNFQRNH YLEKKKKQ
Sbjct: 238 VLWPEIGFWHLLWAVLNFQRNHFYLEKKKKQ 268


>GSVIVT01005618001 assembled CDS
          Length = 242

 Score =  267 bits (683), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 145/275 (52%), Positives = 174/275 (63%), Gaps = 41/275 (14%)

Query: 8   LGFLASSLRNCLFSVLSVGPIPCHLAFIMDGNRRFAKKQKQGVVTGYRAGFTALMSIIKY 67
           LG  A+S  N  F V SV  IP H+AFIMDGNRR+AKK K     GY+AGF AL+S+IKY
Sbjct: 9   LGVWAASGENGSF-VFSVSHIPNHIAFIMDGNRRYAKKWKLEEGAGYKAGFLALLSMIKY 67

Query: 68  CSELGVKYVTIYAFSIDNFRREPEEVKIIMDLMLEKTEGILKEESVVHQYGVRVYFLGNL 127
           C +LGVKY+ IYAFSIDNFRR P+EV+ +MDLM EK +G+LKE+S+V+Q+          
Sbjct: 68  CYKLGVKYIAIYAFSIDNFRRRPQEVQYVMDLMHEKIQGLLKEQSIVNQH---------- 117

Query: 128 KLLCEPLRVAAEKVMKATASNTKLLLFICVAYTSLDEIIHAVHESCNDKLKNIILPDKPH 187
                                      +CV YTS DEI+H+V ESC DK     + + P 
Sbjct: 118 ---------------------------VCVVYTSSDEIVHSVQESCKDKWGETQVLN-PS 149

Query: 188 TDXXXXXXXXXXXKDGIKLVDIEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLY 247
                           IKLVD+EKHMYM   P+PD+LIRTSG   LSNFLLWQ + C LY
Sbjct: 150 KGCNVGGDDEIQDYSIIKLVDLEKHMYMRFAPDPDILIRTSG--CLSNFLLWQATTCLLY 207

Query: 248 SPDALWPEIGLWNLVWAVLNFQRNHSYLEKKKKQS 282
            P ALWPE+GL +L+WAVLNFQRNHSYLEKKKKQS
Sbjct: 208 CPTALWPEVGLRHLMWAVLNFQRNHSYLEKKKKQS 242


>GSVIVT01024746001 assembled CDS
          Length = 233

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 21/246 (8%)

Query: 28  IPCHLAFIMDGNRRFAKKQKQGVVTGYRAGFTALMSIIKYCSELGVKYVTIYAFSIDNFR 87
           +P H+A IMDGN R+A+K+     +G++AG  +L  ++  C + G+K ++++AFS DN+ 
Sbjct: 1   MPEHVAVIMDGNVRWAQKRGLPAASGHQAGVRSLRELVGLCCKWGIKVLSVFAFSYDNWS 60

Query: 88  REPEEVKIIMDLMLEKTEGILKEE-SVVHQYGVRVYFLGNLKLLCEPLRVAAEKVMKATA 146
           R   EV  +M L+    E ++K E     + G+RV  +G+L  L E L+     V + T 
Sbjct: 61  RSEGEVGFLMSLI----ERVVKAELPNFGREGIRVSVIGDLSKLPEQLQKLIIDVEETTK 116

Query: 147 SNTKLLLFICVAYTSLDEIIHAVHESCNDKLKNIILPDKPHTDXXXXXXXXXXXKDGIKL 206
            N++L   + ++Y+   +I+ A           +I P+  +                  L
Sbjct: 117 ENSRLQFIVALSYSGQCDILQACKNIGYKVKDGLIEPEDINKS----------------L 160

Query: 207 VDIEKHMYMALGPEPDVLIRTSGESRLSNFLLWQTSHCTLYSPDALWPEIGLWNLVWAVL 266
           ++ E        P PD+LIRTSGE R+SNF+LWQ ++  L     LWP+ G    V A+ 
Sbjct: 161 IEQELQTNCTEFPFPDLLIRTSGELRVSNFMLWQIAYTELCFFSTLWPDFGKDEFVEALS 220

Query: 267 NFQRNH 272
           +FQ+  
Sbjct: 221 SFQKRQ 226