Jatropha Genome Database

JcCA0304891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304891.10 - phase: 0 /partial
         (495 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029697001 assembled CDS                                       563   e-161
GSVIVT01014971001 assembled CDS                                       135   3e-32

>GSVIVT01029697001 assembled CDS
          Length = 784

 Score =  563 bits (1451), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 292/487 (59%), Positives = 340/487 (69%), Gaps = 24/487 (4%)

Query: 10  STSAVILKFELLQAPITENRLELLAYLEASSVAVHEFRIPPKALFGLHSYCPIHFDIFHA 69
           STSA+ILKFEL+ AP+ EN  EL A L+A   +VHEFRIPPKAL GLHSYCP+HFD FHA
Sbjct: 139 STSAIILKFELMYAPMLENGSELQASLDACPASVHEFRIPPKALLGLHSYCPVHFDSFHA 198

Query: 70  VLVEASVHVSLLKAGSHAHKSRFCDHQFLKTRSPCIEINFVIDQALASVSFVAMNKIMLI 129
           VLV+ S+H++LL+AG HA  S+           P   +  V D               + 
Sbjct: 199 VLVDISIHITLLRAGIHAPSSKV----------PRFGMGHVADLK------------QVF 236

Query: 130 KTLLVARDTLLEELQRLSKAIAQVIDFTDFTSKMNDINMLDSIRRADLGTAKGEVGGR-- 187
           K L  ARD LLEELQ+LSK I Q ID TDF SK+ND  ++ +  +AD+ T   +  G+  
Sbjct: 237 KALFAARDRLLEELQKLSKEINQTIDLTDFISKLNDTKLIHTSLQADVVTTDAQPSGQVS 296

Query: 188 GSLQNGLEKANGIPDFEGDKLQYILSNDALENIFHLLGTQLSYLWSTFLQFHRTNKKKIL 247
           G  Q+GLEKANGI +   D+    LS D L N FHLLG Q+ YLW+TFL FHR NKKKIL
Sbjct: 297 GEPQSGLEKANGIVELRSDRPLNSLSKDDLLNSFHLLGNQILYLWNTFLNFHRANKKKIL 356

Query: 248 RFLRDAWAKDRRTEWSIWMVYSKVEMPHHYISSGTHDASHIVVDKRVSSFWKLADDPAQT 307
            FL DAWA DRR EWSIWMVYSKVEMPHHY++S   ++S      +V S  KL DDP+ T
Sbjct: 357 EFLIDAWANDRRAEWSIWMVYSKVEMPHHYLNSVIDESSFQGGRGKVLSLKKLTDDPSHT 416

Query: 308 AATRAELHRRSIAQMRINASSIQDMYIFGDPLRVPIIYVERVINAPRRTFSENSYFRNLD 367
           AA RAELHRRSIAQM+IN  SIQDM+IFGDP R+PII VERV+N PRRT S NSYF  LD
Sbjct: 417 AAMRAELHRRSIAQMKINNQSIQDMHIFGDPSRIPIIIVERVVNVPRRTTSGNSYFSQLD 476

Query: 368 LIDSPSXXXXXXXXXXXXXXXXNSHKKSRELKIVVFVHGFQGHHLDLRLIRNQWLLIDPK 427
             D+P+                +  +  R LKIVVFVHGFQGHHLDLRL+RNQWLLIDPK
Sbjct: 477 QKDTPNLLTVPLFNAVNKSSVASPQQNGRVLKIVVFVHGFQGHHLDLRLVRNQWLLIDPK 536

Query: 428 IEILMSEANEEKTSGDFREMGLRLAQEVISFLKKKSDKYSRSGGLRDIKLSFVGHSIGNV 487
            E LMSE NE+KTSGDFREMG RLAQEV+SF+K+K DK SR G LR+IKLSFVGHSIGNV
Sbjct: 537 AEFLMSEENEDKTSGDFREMGQRLAQEVVSFVKRKMDKVSRHGTLRNIKLSFVGHSIGNV 596

Query: 488 IIRTALA 494
           IIRTALA
Sbjct: 597 IIRTALA 603


>GSVIVT01014971001 assembled CDS
          Length = 442

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 96/160 (60%), Gaps = 15/160 (9%)

Query: 10  STSAVILKFELLQAPITENRLELLAYLEASSVAVHEFRIPPKALFGLHSYCPIHFDIFHA 69
           STSA++LK EL+ AP+ EN  EL A L+A S +V EF+IPPKA  GLHSYCPIHFD FHA
Sbjct: 117 STSAIVLKSELMYAPMLENGSELQASLDACSASVQEFQIPPKAFLGLHSYCPIHFDSFHA 176

Query: 70  VLVEASVHVSLLKAGSHAHKSRFCDHQFLKTRSPCIEINFVIDQALASVSFVAMNKIMLI 129
           VLV  S+H+ LL+A  HA  S+             +  NF   + +A  +      I + 
Sbjct: 177 VLVGISLHIPLLRAAIHAPSSK-------------VPNNFHATEDVAGENLDG--SIQVF 221

Query: 130 KTLLVARDTLLEELQRLSKAIAQVIDFTDFTSKMNDINML 169
           K      D LLEE Q+LSK I Q ID +DF SK+ND  M+
Sbjct: 222 KASFAVSDRLLEEPQKLSKTINQTIDSSDFISKLNDTRMV 261