Jatropha Genome Database

JcCA0304841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304841.10 + phase: 0 
         (407 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009521001 assembled CDS                                       564   e-161
GSVIVT01031764001 assembled CDS                                       493   e-140

>GSVIVT01009521001 assembled CDS
          Length = 408

 Score =  564 bits (1454), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 265/389 (68%), Positives = 320/389 (82%), Gaps = 1/389 (0%)

Query: 19  GIAVLFAWMSSEERHLKNYVELYSSLGWNSLVCHSQFLNMFFPDKAEALAFDILNRIVEE 78
           GI V+FAWMSS+E+HLKNYV+LYSSLGWNSL+CH +FLN+FFP+KA +LA DILN +V+E
Sbjct: 21  GIVVVFAWMSSQEKHLKNYVQLYSSLGWNSLICHPEFLNVFFPEKATSLASDILNELVKE 80

Query: 79  LKTRPCPLVFMSFSGGPKACMYKVLQIIEGKCKLQLNLDDRRLVRDCISGHIYDSSPVDF 138
           LKTRPCP+VF SFSGGPKACMYKVLQIIEGKC+ QLN D+ RLVRDC++GHIYDS P DF
Sbjct: 81  LKTRPCPVVFASFSGGPKACMYKVLQIIEGKCEAQLNPDEYRLVRDCVAGHIYDSCPTDF 140

Query: 139 TSVLGREFIVHPSVLKMSRPPKVLSWMVNSISDCLDALFLNKFESQRAEYWQTLYSSVSM 198
           TS +G  F++ P+VLK+  PP+++SW+ N I+  LDALFLN+FESQRAEYWQTLYSS+ M
Sbjct: 141 TSDVGTRFLLKPTVLKVPHPPRLVSWIANGIASSLDALFLNRFESQRAEYWQTLYSSIFM 200

Query: 199 GAPYLIVCSESDDLASYQVICNFSQRLQELGADVKLVTMSGSPHVGHFRLYPFDYKAAVT 258
           GAPYLI+CSE DDLA YQ+ICNF+QRLQELG DVKLV  + SPHV H+R +  DYKAAVT
Sbjct: 201 GAPYLILCSEDDDLAPYQIICNFAQRLQELGGDVKLVKWNSSPHVDHYRYHMIDYKAAVT 260

Query: 259 ELLGKAAAVYSQRIRRLEGERLGVEGTHDEISEPIGDLRKAVESPNQSFCGVTIQPSDNF 318
           ELL KAA +YSQRIRRLE ER+ +E  HDE S PI   +KA  S N+ F  V ++ +D+F
Sbjct: 261 ELLEKAAIIYSQRIRRLEAERMSLE-VHDETSSPICQPKKATTSSNECFGRVALELNDHF 319

Query: 319 FMPSSVGYYEGRDMGSLQDEHKEDLIHLHNPPRINAHGVLGQVLFDVCVPKTVEDWDIKS 378
             PSS+ Y EGR++GS+++EHKE LIHL + P INAHGV GQ+LFDVCVPK VEDWDI+S
Sbjct: 320 ISPSSLEYQEGRNVGSVRNEHKEGLIHLSSLPSINAHGVFGQILFDVCVPKDVEDWDIRS 379

Query: 379 SASLSRQPYSSTRRHAPFNPIKCILRSRL 407
           S S +    + TRRHAPFNPI+CI RSRL
Sbjct: 380 SGSSNAPASARTRRHAPFNPIRCIRRSRL 408


>GSVIVT01031764001 assembled CDS
          Length = 407

 Score =  493 bits (1268), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/389 (61%), Positives = 298/389 (76%), Gaps = 2/389 (0%)

Query: 19  GIAVLFAWMSSEERHLKNYVELYSSLGWNSLVCHSQFLNMFFPDKAEALAFDILNRIVEE 78
           G+ V+FAW S +E HLK +V+LYSSLGWNSLVCH+ FLN FFP+KA +LAF  L  +VEE
Sbjct: 21  GVVVIFAWASIQETHLKEFVDLYSSLGWNSLVCHAGFLNAFFPEKATSLAFVALKELVEE 80

Query: 79  LKTRPCPLVFMSFSGGPKACMYKVLQIIEGKCKLQLNLDDRRLVRDCISGHIYDSSPVDF 138
           L+ RPCP+VF +FSGGPKACMYKV QIIEG C+  L++DD RLVR+CISG+IYDSSPVDF
Sbjct: 81  LRIRPCPIVFAAFSGGPKACMYKVFQIIEGSCEAHLHVDDSRLVRNCISGYIYDSSPVDF 140

Query: 139 TSVLGREFIVHPSVLKMSRPPKVLSWMVNSISDCLDALFLNKFESQRAEYWQTLYSSVSM 198
           TS  G  F + P++LKM    K++SW+   ++  LDAL+L +FE QR EYW+TLYSSV +
Sbjct: 141 TSDFGARFGLPPTILKMPGSTKLVSWVAKGVASGLDALYLTRFEFQRTEYWRTLYSSVGL 200

Query: 199 GAPYLIVCSESDDLASYQVICNFSQRLQELGADVKLVTMSGSPHVGHFRLYPFDYKAAVT 258
           GAP+LI+CS+ DDLA YQ++CNFS RLQ+LGADVKL+  + S H GH+R YP +YKAAVT
Sbjct: 201 GAPFLILCSKHDDLAPYQIVCNFSHRLQDLGADVKLLKWNNSLHAGHYRQYPTEYKAAVT 260

Query: 259 ELLGKAAAVYSQRIRRLEGERLGVEGTHDEISEPIGDLRKAVESPNQSFCGVTIQPSDNF 318
           ELL KAA+V+ Q+I +LEGER G+EG  DEISE I +L+KA  + NQS   V I+PSD+F
Sbjct: 261 ELLKKAASVHLQKI-QLEGERAGMEGAQDEISELICNLQKAAVNSNQSLRRVAIEPSDHF 319

Query: 319 FMPSSVGYYEGRDMGSLQDEHKEDLIHLHNPPRINAHGVLGQVLFDVCVPKTVEDWDIKS 378
           F+PSS  Y  GRD G   DE KE  + + +PPRI+AH VLGQ LFDVCVPK +E WDIK 
Sbjct: 320 FLPSSAEYQNGRDSGPSPDELKERSVPVPDPPRISAHSVLGQFLFDVCVPKNIEGWDIKF 379

Query: 379 SASLSRQPYSSTRRHAPFNPIKCILRSRL 407
           S SL+ QP +S RR++ +   KC  RSRL
Sbjct: 380 SGSLNGQPLASARRYSQYVS-KCTRRSRL 407