Jatropha Genome Database

JcCA0304441.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304441.20 - phase: 0 
         (319 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016434001 assembled CDS                                       439   e-124
GSVIVT01034063001 assembled CDS                                       415   e-116
GSVIVT01023897001 assembled CDS                                       313   6e-86
GSVIVT01026930001 assembled CDS                                       293   6e-80
GSVIVT01015369001 assembled CDS                                       249   2e-66
GSVIVT01017070001 assembled CDS                                       234   3e-62
GSVIVT01036908001 assembled CDS                                       224   6e-59

>GSVIVT01016434001 assembled CDS
          Length = 814

 Score =  439 bits (1130), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/262 (80%), Positives = 229/262 (87%), Gaps = 2/262 (0%)

Query: 56  SPSPLGWPIRKAGECKSLLASSDSEDQEKSHSEDSKFKKLTSSKISEIDMMKARFAKLLL 115
           SP+ LGWPIRKA E +    S  SED+ KSH  DSK K+L  SK+SEI+MMK RF+KLLL
Sbjct: 56  SPTLLGWPIRKA-EVRKSSVSDVSEDETKSHLNDSKVKQL-GSKVSEIEMMKERFSKLLL 113

Query: 116 GEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKSMWRREMEWLLCVGDHI 175
           GEDMSGSGKG CTA+AISNAITNLC TIFGQLWRLEPL PEKKSMWRREME LLCV DHI
Sbjct: 114 GEDMSGSGKGVCTALAISNAITNLCATIFGQLWRLEPLPPEKKSMWRREMELLLCVSDHI 173

Query: 176 VELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEILDSFVNAEFWYVDQGI 235
           V+LIPSWQTFPDGSKLEVMTCRPRSD+FINLPALRKLDNMLLEILD F N EFWYVDQGI
Sbjct: 174 VQLIPSWQTFPDGSKLEVMTCRPRSDIFINLPALRKLDNMLLEILDGFTNTEFWYVDQGI 233

Query: 236 VAPDADGSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRKQLNHTRECTNQILKAAMAIN 295
           +AP+ DGSASFRK IQRQEEKWWLPVPR+P GGLS+NSRKQLNH RE  NQILKAAMAIN
Sbjct: 234 IAPETDGSASFRKPIQRQEEKWWLPVPRVPPGGLSENSRKQLNHKRESANQILKAAMAIN 293

Query: 296 SIALAEMEVPDSYMEALPKQKK 317
           S ALAEMEVP+S++EALPK  +
Sbjct: 294 SNALAEMEVPESFLEALPKNGR 315


>GSVIVT01034063001 assembled CDS
          Length = 1231

 Score =  415 bits (1066), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/261 (74%), Positives = 221/261 (84%), Gaps = 2/261 (0%)

Query: 57  PSPLGWPIRKAGECKSLLASSDSEDQEKSHSEDSKFKKLTSSKISEIDMMKARFAKLLLG 116
           P PL W ++K  E    L+S D +  EK HS++ K +K   S IS+I+MMK RF+KLLLG
Sbjct: 689 PLPLDWSVQKQ-ESSHSLSSGDPDGAEKPHSDEMKLEK-QGSTISDIEMMKERFSKLLLG 746

Query: 117 EDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKSMWRREMEWLLCVGDHIV 176
           EDMSG G G CTA+AISNAITNLC T+FGQLWRLEPL  EKK+MWRREMEWLLCV DHIV
Sbjct: 747 EDMSGCGNGVCTALAISNAITNLCATLFGQLWRLEPLPAEKKAMWRREMEWLLCVSDHIV 806

Query: 177 ELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEILDSFVNAEFWYVDQGIV 236
           ELIPSWQTFPDGSKLEVMTCRPRSDL+INLPALRKLDNMLLE+LDSF + EFWYVDQGI+
Sbjct: 807 ELIPSWQTFPDGSKLEVMTCRPRSDLYINLPALRKLDNMLLEVLDSFEDTEFWYVDQGIL 866

Query: 237 APDADGSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRKQLNHTRECTNQILKAAMAINS 296
           APD DGS+SFR+ +QRQEEKWWLPVPR+P GGL +NSRKQL H R+CTNQILKAAMAINS
Sbjct: 867 APDTDGSSSFRRPLQRQEEKWWLPVPRVPPGGLHENSRKQLQHKRDCTNQILKAAMAINS 926

Query: 297 IALAEMEVPDSYMEALPKQKK 317
            ALAEME+P+SY+E LPK  K
Sbjct: 927 TALAEMEIPESYLEVLPKNGK 947



 Score =  330 bits (846), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 159/256 (62%), Positives = 193/256 (75%), Gaps = 2/256 (0%)

Query: 59  PLGWPIRKAGECKSLLASSDSEDQEKSHSEDSKFKKLTSSKISEIDMMKARFAKLLLGED 118
           PL WP++K  E    + S D    EK H  + KF+K   S+ISE++MMKARF++LLLGED
Sbjct: 135 PLDWPLQKVEESH-FVRSDDIHGAEKPHLHEMKFEK-HCSEISEVEMMKARFSRLLLGED 192

Query: 119 MSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKSMWRREMEWLLCVGDHIVEL 178
           MSG G G CTA+AIS  ITNL  T+FG++W+LEPL P KK+MWRR+ EWLL V DHIVE 
Sbjct: 193 MSGRGIGVCTALAISKGITNLYATLFGKIWKLEPLDPMKKAMWRRDKEWLLSVSDHIVEF 252

Query: 179 IPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEILDSFVNAEFWYVDQGIVAP 238
            P+WQ FPDGS+ EVMTCR R+DL+ NLPALRKLD+ML+E LDSF + EFWYV+QGI++P
Sbjct: 253 TPAWQKFPDGSEGEVMTCRLRADLYANLPALRKLDDMLIETLDSFEDTEFWYVNQGILSP 312

Query: 239 DADGSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRKQLNHTRECTNQILKAAMAINSIA 298
            ADGS+S    +  QEEK WLPVP +P  GLS+NSRK L   R+ TNQI KA  AINS  
Sbjct: 313 KADGSSSSPGHLHHQEEKCWLPVPHVPPTGLSENSRKHLQQKRDFTNQIRKAVRAINSTT 372

Query: 299 LAEMEVPDSYMEALPK 314
           LAEMEVP+ Y+EALPK
Sbjct: 373 LAEMEVPEPYLEALPK 388


>GSVIVT01023897001 assembled CDS
          Length = 587

 Score =  313 bits (803), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 149/226 (65%), Positives = 176/226 (77%), Gaps = 6/226 (2%)

Query: 98  SKISEIDMMKARFAKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEK 157
           + +SE +MMK RFAKLLLGEDMSG GKG CTA+AISNAITNL  T+FG+LWRLEPLAP+K
Sbjct: 93  TDLSEAEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQK 152

Query: 158 KSMWRREMEWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLL 217
           K+MW REMEWLLCV D IVEL+PS Q FP G   EVM  RPRSDL++NLPAL+KLD MLL
Sbjct: 153 KAMWCREMEWLLCVSDSIVELVPSIQQFPGGGTYEVMATRPRSDLYMNLPALKKLDAMLL 212

Query: 218 EILDSFVNAEFWYVDQGIVAPDADG------SASFRKTIQRQEEKWWLPVPRIPAGGLSD 271
            +LD F   EFWYVD+GI+  +AD       SAS  +   RQEEKWWLP P++P  GLS+
Sbjct: 213 SMLDGFCETEFWYVDRGIIVAEADNHDAYPLSASSGRPSIRQEEKWWLPCPKVPPNGLSE 272

Query: 272 NSRKQLNHTRECTNQILKAAMAINSIALAEMEVPDSYMEALPKQKK 317
           ++RK+L   R+CTNQILKAAMAINS  LAEME+P +Y+E LPK  K
Sbjct: 273 DARKRLQQCRDCTNQILKAAMAINSSVLAEMEIPTAYLETLPKNGK 318


>GSVIVT01026930001 assembled CDS
          Length = 495

 Score =  293 bits (751), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 141/214 (65%), Positives = 168/214 (78%), Gaps = 1/214 (0%)

Query: 101 SEIDMMKARFAKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKSM 160
           +E+++MK RF+KLLLGEDMSGSGKG CTA+ ISNAITNL  TIFGQ  +LEPL+PEKKSM
Sbjct: 113 AELELMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATIFGQNQKLEPLSPEKKSM 172

Query: 161 WRREMEWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEIL 220
           W+REM  LL V D++VE  PS QT P+G+ +EVM  RPRSD+ INLPAL+KLD ML EIL
Sbjct: 173 WKREMNCLLAVCDYMVEFFPSLQTLPNGTSVEVMASRPRSDIHINLPALQKLDTMLQEIL 232

Query: 221 DSFVNAEFWYVDQGIVAPDADGSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRKQLNHT 280
           DSF   EFWY +QG +   A  + SFR   QR +EKWWLPVP IP GGLS+ +RK L HT
Sbjct: 233 DSFKETEFWYAEQGKLV-SATRAGSFRLITQRPDEKWWLPVPCIPRGGLSEKARKDLKHT 291

Query: 281 RECTNQILKAAMAINSIALAEMEVPDSYMEALPK 314
           R+C NQI KAAM+INS  LAEM++PDSY+ ALPK
Sbjct: 292 RDCANQIHKAAMSINSSLLAEMKIPDSYIAALPK 325


>GSVIVT01015369001 assembled CDS
          Length = 536

 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 119/222 (53%), Positives = 162/222 (72%), Gaps = 12/222 (5%)

Query: 97  SSKISEIDMMKARFAKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPE 156
           +S   E++ ++ RFAKLLLGEDMSG G G  +A+A+SNAITNL  ++FG+ W+LEP++ E
Sbjct: 99  ASHSQEVEQIRERFAKLLLGEDMSGRGTGVSSALALSNAITNLAASVFGEQWKLEPMSAE 158

Query: 157 KKSMWRREMEWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNML 216
           +K+MWR++++ LL V D+IVEL+PS QT  DG+ +EVM  R R DL +N+PALRKLD ML
Sbjct: 159 RKAMWRKDIDLLLSVADYIVELVPSQQTAKDGTTMEVMVSRQRKDLLMNIPALRKLDAML 218

Query: 217 LEILDSFVNA-EFWYVDQGIVAPDADGSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRK 275
           +E LD+F    EFWYV +     DA+ + S      R+++KWWLP P++P  GLSD SRK
Sbjct: 219 IEHLDNFKGPNEFWYVSR-----DAEDAGS------REDDKWWLPRPKVPPNGLSDASRK 267

Query: 276 QLNHTRECTNQILKAAMAINSIALAEMEVPDSYMEALPKQKK 317
            L   +E  NQ+LKAAMAIN+  L+EMEVPD Y+E+LPK  +
Sbjct: 268 WLQFQKESVNQVLKAAMAINAQLLSEMEVPDDYIESLPKNGR 309


>GSVIVT01017070001 assembled CDS
          Length = 434

 Score =  234 bits (598), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/213 (52%), Positives = 154/213 (72%), Gaps = 9/213 (4%)

Query: 106 MKARFAKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPEKKSMWRREM 165
           MK RF+KLLLGEDMSG GKG  +A+A+SNAITN+  ++FG+L RLEP+  E+K+MWRRE+
Sbjct: 1   MKERFSKLLLGEDMSGHGKGVSSALALSNAITNVAASVFGELRRLEPMPVERKTMWRREI 60

Query: 166 EWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNMLLEILDSFVN 225
           +WLL V DHIVE++P  Q   DG+ +EVM  R R DL +N+PALRKLD ML++ L++F +
Sbjct: 61  DWLLSVSDHIVEMVPQ-QRSKDGTSMEVMVTRQRCDLLMNIPALRKLDAMLIDTLENFKD 119

Query: 226 A-EFWYVDQGIVAPDADGSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRKQLNHTRECT 284
             EF+Y       P  D   S R+  QR  +KWW+P  ++P  GLS+ +RK L   ++  
Sbjct: 120 QKEFYY-------PSGDAKDSSREDSQRTSDKWWIPNAKVPPNGLSEVTRKWLQFQKDSV 172

Query: 285 NQILKAAMAINSIALAEMEVPDSYMEALPKQKK 317
           NQ+LKAAMAIN+  L+EME+P++Y+E+LPK  +
Sbjct: 173 NQVLKAAMAINAQILSEMEIPENYIESLPKNGR 205


>GSVIVT01036908001 assembled CDS
          Length = 912

 Score =  224 bits (570), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 153/221 (69%), Gaps = 7/221 (3%)

Query: 97  SSKISEIDMMKARFAKLLLGEDMSGSGKGACTAMAISNAITNLCVTIFGQLWRLEPLAPE 156
           S + S++++MK RF+KLLLGED++G  KG  +A+A+SNAITNL V++FG+LW+LEPL+ E
Sbjct: 114 SVRFSDVEVMKERFSKLLLGEDITGGKKGLTSALALSNAITNLAVSVFGELWKLEPLSEE 173

Query: 157 KKSMWRREMEWLLCVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFINLPALRKLDNML 216
           +K  W+REM+WLL   +++VEL+P+ Q+  +G  LE+MT + R+D+ +NLPAL+KLD+ML
Sbjct: 174 RKVKWQREMDWLLSPTNYMVELVPAKQSGANGRTLEIMTPKARADIHMNLPALQKLDSML 233

Query: 217 LEILDSFVNAEFWYVDQGIVAPDADGSASFRKTIQRQEEKWWLPVPRIPAGGLSDNSRKQ 276
           +E LDS V+ EFWY + G         A  R     Q ++WWLP P++P  GLSD  RK+
Sbjct: 234 IETLDSMVDTEFWYAEGG-------SRAEGRTRSMSQSKRWWLPSPQVPTTGLSDPERKK 286

Query: 277 LNHTRECTNQILKAAMAINSIALAEMEVPDSYMEALPKQKK 317
           L H  +  +Q+ KAA AIN   L EM VP    +AL K  K
Sbjct: 287 LLHQAKVVHQVFKAARAINENVLLEMPVPTLIRDALAKSGK 327