Jatropha Genome Database

JcCA0304431.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304431.30 - phase: 1 /pseudo/partial
         (119 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008827001 assembled CDS                                        77   2e-15
GSVIVT01008829001 assembled CDS                                        77   2e-15
GSVIVT01034237001 assembled CDS                                        71   1e-13
GSVIVT01003954001 assembled CDS                                        70   2e-13
GSVIVT01000173001 assembled CDS                                        54   1e-08
GSVIVT01025700001 assembled CDS                                        47   1e-06

>GSVIVT01008827001 assembled CDS
          Length = 542

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 45/58 (77%)

Query: 56  LDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEYP 113
           LDPGNLE DLQAGA  G+ LLW+++   +  L+IQ L+A +GV+ G+HL++LC+ EYP
Sbjct: 61  LDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYP 118


>GSVIVT01008829001 assembled CDS
          Length = 535

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 56  LDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEYPNW 115
           LDPGNLE DLQAG+  GY LLW+++   +  L+IQ L+A +GV  G+HL++LCR EYP +
Sbjct: 34  LDPGNLETDLQAGSNHGYELLWVVLIGLIFALVIQSLAANLGVITGKHLSELCRAEYPKY 93


>GSVIVT01034237001 assembled CDS
          Length = 541

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 56  LDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEYP 113
           +DPGN E DLQ+GA   Y LLW+++ A+   L+IQ L+A +GV  G+HLA+ CR EYP
Sbjct: 59  IDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRIEYP 116


>GSVIVT01003954001 assembled CDS
          Length = 510

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 41/59 (69%)

Query: 56  LDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEYPN 114
           LDPGNLE DLQAGA   Y LLW+++   +   +IQ  SA +GVA G+HL++ CR EYP 
Sbjct: 30  LDPGNLETDLQAGANHKYELLWIVLVGLIFAFIIQSRSANLGVATGKHLSEHCRMEYPK 88


>GSVIVT01000173001 assembled CDS
          Length = 410

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 5/67 (7%)

Query: 54  SVLDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLA--KLCREE 111
           + LDPGNLE DLQAGAIAGYSLLW+++W  VM  L  ++ A +   IG  +A   L    
Sbjct: 4   AFLDPGNLEGDLQAGAIAGYSLLWMVLW--VMAEL-ALIGADIQEVIGSAIAIKILSNGV 60

Query: 112 YPNWSTI 118
            P WS +
Sbjct: 61  LPLWSGV 67


>GSVIVT01025700001 assembled CDS
          Length = 732

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 56  LDPGNLERDLQAGAIAGYSLLWLLVWATVMGLLIQVLSARVGVAIGRHLAKLCREEY 112
           +DPG     ++ GA  G+ L+ L++      +L Q L+AR+GV  GR LA++C +EY
Sbjct: 33  VDPGKWAAVVEGGARFGFDLVALMLVFNFAAVLCQCLAARIGVVTGRDLAQICSDEY 89