Jatropha Genome Database

JcCA0304431.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304431.20 - phase: 0 /TE
         (1368 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018780001 assembled CDS                                       218   2e-56

>GSVIVT01018780001 assembled CDS
          Length = 1567

 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 115/288 (39%), Positives = 174/288 (60%), Gaps = 3/288 (1%)

Query: 676  NATSTFMQLMIQVLHPFLCKFVVVYFDDNLIFSCSEEEHLQHLRLVLNTLQENELFINLK 735
            N  + FM LM +V   +L +FV+V+ DD LI+S S EEH QHL   L TL+ ++L+  L 
Sbjct: 972  NVPAAFMDLMNRVFRAYLDQFVIVFVDDILIYSRSLEEHKQHLVTTLGTLRRHQLYGKLD 1031

Query: 736  KCSFMTKEQILFLGYVVSSKGIHVDDRKIEAIRNLPIPKNITEVHNFHGLATFYRLFIRN 795
            K  F   E + FLG+VVS  GI VD  K+EA++    P N+ EV +F GLA +YR F+ +
Sbjct: 1032 KSEFWLTE-VNFLGHVVSEAGIAVDHSKVEAVQEWQRPTNVFEVRSFLGLAGYYRRFVED 1090

Query: 796  FSSIIAPITDCLKKERVHQFIWIEAANKSFEEIKDKLTSAPILALLNFDKLFEVDCDACG 855
            FS I AP+T   +K    +F W E    +F+E+K KLT+AP+L      +LF + CDA  
Sbjct: 1091 FSRIAAPMTRLTRKGV--KFDWNEECENAFQELKRKLTTAPVLTAPISGELFTIYCDAST 1148

Query: 856  IGIGGVLSQSERPIAFFSEKLNEVRQRWSTYEQELYVVYRAFKTWEHYLLGREFIIYTDN 915
            +G+G VL Q  + +A+ S +L +  + +  ++ EL  V  A KTW HYL G +F +Y+D+
Sbjct: 1149 VGLGCVLMQQGKVVAYASRQLKQHERNYPAHDLELAAVVFALKTWRHYLYGEKFEVYSDH 1208

Query: 916  QALTHFKTQKTVSKMHARWAAYFGAFHYIIKHKSGTCNMVADALSRRA 963
            ++L +  TQK ++    RW      + + + ++ G  N+VADALSR++
Sbjct: 1209 KSLKYIFTQKDLNSRQRRWMETLEDYDFALHYQPGKANVVADALSRKS 1256