Jatropha Genome Database

JcCA0304431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304431.10 - phase: 2 /TE
         (440 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000641001 assembled CDS                                        85   8e-17
GSVIVT01031724001 assembled CDS                                        77   2e-14
GSVIVT01011334001 assembled CDS                                        54   2e-07

>GSVIVT01000641001 assembled CDS
          Length = 947

 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 56/76 (73%)

Query: 203 KLTSNDGEDKVDSNVYRSLIGSLLYLTSTRPDLMFSASLLSRFMHLPSQAHLNAARIVLR 262
           KL  + G  KVDS +Y+ ++GSL+YLT+TRPD+M S SL+SR+M  P++ H  AA+ + R
Sbjct: 221 KLNKDHGGKKVDSIIYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKICR 280

Query: 263 YIKGTIDFGILLERKK 278
           Y++GT DFG+  ++ K
Sbjct: 281 YLQGTKDFGLFYKKGK 296


>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 60/95 (63%)

Query: 178  YAWDVLKKFQLEQDKSVSTPLVHNEKLTSNDGEDKVDSNVYRSLIGSLLYLTSTRPDLMF 237
            Y  D+L++  L + K V++P+     L+  DG    D  +YRSL+G+L Y T TRPD+ +
Sbjct: 950  YICDLLQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAY 1009

Query: 238  SASLLSRFMHLPSQAHLNAARIVLRYIKGTIDFGI 272
            + +   +FMH P+  HL A + VLRY+KG++ +G+
Sbjct: 1010 TINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGL 1044


>GSVIVT01011334001 assembled CDS
          Length = 640

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%)

Query: 97  GFRRSDNEATLYVENLKDGEKLILSLYVNDMLVIGSVFQLLNNFKKEMQQEFEMSYLGLM 156
           G+    ++ TL+V++   G   I+ +YV D+++     + +   K     EFE+  LG +
Sbjct: 22  GYSWCHSDHTLFVKHTVKGRTAIIIVYVGDIILTKDHEEEIGKLKSIFAHEFEIKDLGNL 81

Query: 157 NYFLGMEFDQMEQGIFLTQRKYAWDVLKKFQL 188
            YF GME  +   GI ++Q KY  D+L + ++
Sbjct: 82  KYFFGMEITRSNMGIVVSQCKYVLDLLTEIEM 113