Jatropha Genome Database

JcCA0304341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304341.10 - phase: 2 /partial
         (269 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016885001 assembled CDS                                       519   e-148
GSVIVT01015238001 assembled CDS                                       501   e-142
GSVIVT01035357001 assembled CDS                                       499   e-142
GSVIVT01007712001 assembled CDS                                       379   e-106

>GSVIVT01016885001 assembled CDS
          Length = 492

 Score =  519 bits (1337), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/269 (95%), Positives = 265/269 (98%)

Query: 1   DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPNHCNMLAYSSS 60
           DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP HCNMLAYSSS
Sbjct: 224 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 283

Query: 61  RGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMT 120
           +GSIRL DLRQSALCDSH+KLFEEQEAPGSRSFFTEIIASISDIKF+KDGR ILSRDYMT
Sbjct: 284 KGSIRLNDLRQSALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFSKDGRFILSRDYMT 343

Query: 121 LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR 180
           LKLWDINMDSGPV+TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG+RVATGSYSNLFR
Sbjct: 344 LKLWDINMDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGMRVATGSYSNLFR 403

Query: 181 VFGCAPGSTEETTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGAESPGVDANGNSFDF 240
           VFGC+PGSTE TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGA+SPGVDANGNSFDF
Sbjct: 404 VFGCSPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGADSPGVDANGNSFDF 463

Query: 241 TTKLLHLAWHPTENSIACAAANSLYMYYA 269
           TTKLLHLAWHP+ENSIACAAANSLYMYYA
Sbjct: 464 TTKLLHLAWHPSENSIACAAANSLYMYYA 492


>GSVIVT01015238001 assembled CDS
          Length = 508

 Score =  501 bits (1291), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/269 (89%), Positives = 248/269 (92%), Gaps = 1/269 (0%)

Query: 1   DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPNHCNMLAYSSS 60
           DGETFISADDLRINLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAYSSS
Sbjct: 241 DGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNMLAYSSS 300

Query: 61  RGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMT 120
           +GSIRLIDLRQSALCDSHAKLFE  EAP S+SFFTEIIASISDIKF KDGR+ILSRDYM 
Sbjct: 301 KGSIRLIDLRQSALCDSHAKLFEGMEAPNSKSFFTEIIASISDIKFGKDGRYILSRDYMN 360

Query: 121 LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR 180
           LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFR
Sbjct: 361 LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGTRVATGSYSNLFR 420

Query: 181 VFGCAPGSTEETTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGAESPGVDANGNSFDF 240
           VFGC  GSTE TTLEASKNPMRRQ   PSRP RSLS+  RV RRG ESP VDANGN+FD 
Sbjct: 421 VFGCTAGSTEATTLEASKNPMRRQAPAPSRP-RSLSTFARVGRRGPESPAVDANGNAFDL 479

Query: 241 TTKLLHLAWHPTENSIACAAANSLYMYYA 269
           +TKLLHLAWHPTENS+ACAAANSLYMY+A
Sbjct: 480 STKLLHLAWHPTENSLACAAANSLYMYFA 508


>GSVIVT01035357001 assembled CDS
          Length = 496

 Score =  499 bits (1285), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/269 (88%), Positives = 253/269 (94%)

Query: 1   DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPNHCNMLAYSSS 60
           DGETFISADDLRINLWNLEIS+QSFNIVDVKPANMEDLTEVITSAEFHP+HCNMLAYSSS
Sbjct: 228 DGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPSHCNMLAYSSS 287

Query: 61  RGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMT 120
           +GSIRLIDLRQSALCD+H KLFEE EA  SRSFFTEIIASISDIKF+KDGRH+LSRDYMT
Sbjct: 288 KGSIRLIDLRQSALCDTHCKLFEELEASTSRSFFTEIIASISDIKFSKDGRHLLSRDYMT 347

Query: 121 LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR 180
           LKLWDINM+S PVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR
Sbjct: 348 LKLWDINMESVPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR 407

Query: 181 VFGCAPGSTEETTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGAESPGVDANGNSFDF 240
           VFGC+ GSTE TTLEA+KNPM RQVQTPSRPSRSL S++RV RRG +S G D NGN+FDF
Sbjct: 408 VFGCSEGSTEATTLEANKNPMMRQVQTPSRPSRSLGSLSRVGRRGTDSSGADTNGNAFDF 467

Query: 241 TTKLLHLAWHPTENSIACAAANSLYMYYA 269
            TKLLHLAWHPTENS+ACA +NSLYMYYA
Sbjct: 468 MTKLLHLAWHPTENSLACATSNSLYMYYA 496


>GSVIVT01007712001 assembled CDS
          Length = 503

 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/272 (66%), Positives = 220/272 (80%), Gaps = 3/272 (1%)

Query: 1   DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPNHCNMLAYSSS 60
           DGETF+SADDLRINLWNLEIS+Q FNI+D+KP+NMEDLTEVIT+AEFHP HCN+LAYSSS
Sbjct: 232 DGETFVSADDLRINLWNLEISDQCFNIIDMKPSNMEDLTEVITAAEFHPIHCNLLAYSSS 291

Query: 61  RGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRHILSRDYMT 120
           RG IRL+DLRQSA+CD +A++ +  E+ G +SFFTEI++SISDIKFA DGRH+LSRDYM 
Sbjct: 292 RGFIRLVDLRQSAICDHNARILQHGESSGLKSFFTEIVSSISDIKFASDGRHLLSRDYMN 351

Query: 121 LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFR 180
           LKLWDI M++ PVA F++HE+LRPKLCDLY ND+IFDKFECCLSG GL  ATGSYSNL R
Sbjct: 352 LKLWDIRMETSPVAIFKIHEHLRPKLCDLYNNDAIFDKFECCLSGYGLHFATGSYSNLLR 411

Query: 181 VFGCAPGSTEETTLEASKNPMRR-QVQTPSRPSR-SLSSITRVVRRGA-ESPGVDANGNS 237
           +F    GS E  T+EAS+NP R+  +Q   +  R S+S++TR   R A E+    +N  S
Sbjct: 412 IFSYGVGSEEGITMEASRNPNRKSHLQAAPKARRSSISNLTRGFSRQANENLSSGSNELS 471

Query: 238 FDFTTKLLHLAWHPTENSIACAAANSLYMYYA 269
            + ++KLLHLAWHPT   IACAA NSLYMYYA
Sbjct: 472 CNLSSKLLHLAWHPTTKFIACAAGNSLYMYYA 503