Jatropha Genome Database

JcCA0304251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304251.20 + phase: 0 
         (163 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033607001 assembled CDS                                       200   3e-52
GSVIVT01011450001 assembled CDS                                        80   6e-16

>GSVIVT01033607001 assembled CDS
          Length = 466

 Score =  200 bits (508), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/109 (88%), Positives = 103/109 (94%), Gaps = 2/109 (1%)

Query: 15  RLEGRDVQKNAIAKMAHTHSALVLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDVM 74
           RL+  D++K  I +MAHTH AL+LVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDVM
Sbjct: 232 RLQISDIRK--ITEMAHTHGALLLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDVM 289

Query: 75  AGVLAVKGQSLARDLYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQ 123
           AGVLAVKG+SLA+DLYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQ
Sbjct: 290 AGVLAVKGESLAKDLYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQ 338


>GSVIVT01011450001 assembled CDS
          Length = 497

 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 67/106 (63%), Gaps = 1/106 (0%)

Query: 26  IAKMAHTHSALVLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDVMAGVLAVKGQSL 85
           ++++ H   ALV +D++  +P+  + L LGAD+V+HSATK+IAGH+DV+AG ++   + L
Sbjct: 274 VSELCHRKGALVCIDSTFATPLNQKTLSLGADLVLHSATKYIAGHNDVIAGCIS-GSEKL 332

Query: 86  ARDLYFLQNAEGSGLAPFDCWICLRGIKTMALRVEKQQVLILTQPK 131
              +  L +  G  L P   ++ +RG+KT+ LRV++Q    L   K
Sbjct: 333 VSTIRNLHHVLGGVLNPNAAYLIIRGMKTLHLRVQQQNSTALRMAK 378