Jatropha Genome Database

JcCA0304251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304251.10 - phase: 0 /TE
         (121 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010555001 assembled CDS                                        58   1e-09

>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 26 KVCHLKKALYALKQPPRDWFDRFSKAMISLGYQQRNVDHTTFI-KNHQGKIIILI 79
          KVCHL++ALY LKQ PR WF +FS  +  LGY     D   F+ +  +G I++L+
Sbjct: 30 KVCHLRRALYGLKQAPRAWFAKFSSTIFRLGYTASPYDSALFLRRTDKGTILLLL 84