Jatropha Genome Database

JcCA0304141.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304141.30 - phase: 0 /partial
         (295 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035648001 assembled CDS                                       504   e-143

>GSVIVT01035648001 assembled CDS
          Length = 987

 Score =  504 bits (1298), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 240/295 (81%), Positives = 263/295 (89%)

Query: 1   VVHTQAKVIADQEVMYKYISRNLLFVVTVAPKAAGGIGSATPDESWLVAYLIDTITGRIL 60
           VVHTQAKVI DQ+VMYKY+S+NLLFV TVAPKA G IGS TP+ESWLV YLIDT+TGRI+
Sbjct: 693 VVHTQAKVITDQDVMYKYVSKNLLFVATVAPKATGEIGSVTPEESWLVVYLIDTVTGRII 752

Query: 61  HRMTHHGSHGPVRAVFSENWVVYHYFNLKAHRYEMSVIEIYDQSRADNKDVLKLVLGKHN 120
           +RMTHHG+ GPV AVFSENWVVYHYFNL+AHRYEMSV+EIYDQSRADNKDV KLVLGKHN
Sbjct: 753 YRMTHHGTQGPVHAVFSENWVVYHYFNLRAHRYEMSVVEIYDQSRADNKDVWKLVLGKHN 812

Query: 121 LTAPVSSYSRPEVTTKSQSYYFTHSVKAIAVTFTAKGITSKQLLIGTIGDQVLALDKRFL 180
           LT+PVSSYSRPEV TKSQ Y+FTHSVKA+AVT TAKGITSKQLLIGTIGDQVLALDKR+L
Sbjct: 813 LTSPVSSYSRPEVITKSQFYFFTHSVKAMAVTSTAKGITSKQLLIGTIGDQVLALDKRYL 872

Query: 181 DPRRTINPTQAEKEEGIIPLTDSLPIIPQSYVTHALQVEGLRGIISAPAKLESTTLVFVY 240
           DPRRTINP+Q+E+EEGIIPLTDSLPIIPQSYVTH L+VEGLRGI++APAKLESTTLVF Y
Sbjct: 873 DPRRTINPSQSEREEGIIPLTDSLPIIPQSYVTHNLKVEGLRGIVTAPAKLESTTLVFAY 932

Query: 241 GVDLFFTRLAPSRTYDSLTEDFSYXXXXXXXXXXXXXXXXXWILSERKELQDKWR 295
           GVDLFFTR+APSRTYD LT+DFSY                 WILSERKELQ+KWR
Sbjct: 933 GVDLFFTRIAPSRTYDLLTDDFSYALLLITIVALVAAIFVTWILSERKELQEKWR 987