Jatropha Genome Database

JcCA0304141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304141.20 - phase: 0 
         (350 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031720001 assembled CDS                                        57   2e-08
GSVIVT01011616001 assembled CDS                                        52   4e-07

>GSVIVT01031720001 assembled CDS
          Length = 405

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 2/106 (1%)

Query: 236 AERALAALELMCTVEEGAAELRAHALAMPVMVAKMGEMEGRGKEYAISALSVVYGGGVLD 295
            ERALA +EL+C V  G A   AHAL +P++V K+ ++  R  EYA  AL  +      +
Sbjct: 260 VERALATVELLCRVPAGCAAFAAHALTVPLLVRKILKVSDRATEYAAGALLSLCSAA--E 317

Query: 296 EQVHQAPPEEVARAVILALQGDCTARARRKGAQLLKALQEFGRADS 341
           +   +A    V   ++L +Q DCT RA+RK   LLK L++    DS
Sbjct: 318 QSQREAVSAGVVTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPEDS 363


>GSVIVT01011616001 assembled CDS
          Length = 355

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 10/106 (9%)

Query: 235 VAERALAALELMCTVEEGAAELRAHALAMPVMVAKMGEMEGRGKEYAISALSVVY----- 289
           V E+AL  L+ +C  EEG  +   HAL MPV+V K+  +     E+++S L  +      
Sbjct: 233 VCEKALGVLDGICGCEEGREKAYGHALTMPVLVKKLLRVSDLATEFSVSILWKLSKNEKR 292

Query: 290 -GGGVLDEQVHQAPPEEVARAVILALQGDCTARARRKGAQLLKALQ 334
             G VL E +     ++    ++L LQ  C+ R + K  +LLK L 
Sbjct: 293 EDGSVLVEALQVGAFQK----LLLLLQVGCSDRTKEKATELLKLLN 334