Jatropha Genome Database

JcCA0304141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304141.10 - phase: 0 
         (565 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035650001 assembled CDS                                       729   0.0  
GSVIVT01027428001 assembled CDS                                       406   e-113
GSVIVT01033574001 assembled CDS                                        49   8e-06

>GSVIVT01035650001 assembled CDS
          Length = 549

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/542 (65%), Positives = 419/542 (77%), Gaps = 20/542 (3%)

Query: 22  MPPPAPVRCDNT-GCTLFNSYGAWNDRKACFVPNVLYPSTEEKLRLAVGYAXXXXXXXXX 80
           MPPP+PV+C+ + GC L NSYG W DRK C V ++ YP TEE++RLAV  A         
Sbjct: 1   MPPPSPVQCNGSAGCILRNSYGEWGDRKDCRVLSIAYPETEEEMRLAVAQANQKKQKVKV 60

Query: 81  XXXFSHTIPKLACPAASEHK-NSILISTLNYSSSIEIDKANLAVTVDAGVGLRQLIDKVE 139
              FSHTIPKLACP    +  N++LIST    S+IEID A + VT D+GVGLR LI++VE
Sbjct: 61  VSGFSHTIPKLACPGKEYYSGNAVLISTAKLKSTIEIDTAEMVVTADSGVGLRDLINRVE 120

Query: 140 EAGLSLVTAPYWEGASVGGVICTXXXXXXXXXXXXAVHDHVIGLSLIVPAKESEGYAKII 199
            AGLSLV APYWEG SVGG+I T            AVHDHV+GLSL+VPAKESEG+AKII
Sbjct: 121 AAGLSLVAAPYWEGLSVGGLISTGAHGSSWWGKGGAVHDHVVGLSLVVPAKESEGFAKII 180

Query: 200 RIEAQDPLLKAAKVSLGMLGVISKVKLSLEQAFKRSITYNFTDDGNIEDMIINHGKKYEF 259
           R+EAQDPLL AAKVS+G+LG ISKVKLSLE  FKRSIT NFTDD + ED  ++H KK+EF
Sbjct: 181 RLEAQDPLLNAAKVSMGILGAISKVKLSLEPGFKRSITNNFTDDAHFEDEFMDHAKKHEF 240

Query: 260 GDITWYPSRHTAVYRYDSRVPLNASGDGVFDFLGFQSNSIVVSQTTRATEKSLEKANNVN 319
            DITWYPSR TAVYRYD RVPLN SGDG+ DFLGFQSNSI+ S+  RA EK+LE + +V 
Sbjct: 241 ADITWYPSRRTAVYRYDDRVPLNTSGDGINDFLGFQSNSILTSKLLRAAEKALENSRSVR 300

Query: 320 GKCLLAATFVGFKKLVANGLK-NGLLFTGYPVVGHQGKMQTSGSCLYSPETRIDTSCAWD 378
           GKC  A+T + +K+LVANGLK N L+FTGYPVVGHQGKMQTSGSCLYSP TR D +CAWD
Sbjct: 301 GKCATASTVLAYKRLVANGLKNNNLIFTGYPVVGHQGKMQTSGSCLYSPSTRTDITCAWD 360

Query: 379 PRINGLFFYETTAIFPASKFQDFIKDVKKLRDIKPENFCGVDIYNGFLIRYIKASDAYLG 438
           PRINGLFFYETTAIFPA+KF +FI++VK LR++K +NFCGVD+YNGFLIR+IKAS AYLG
Sbjct: 361 PRINGLFFYETTAIFPATKFAEFIREVKTLRELKIDNFCGVDMYNGFLIRFIKASGAYLG 420

Query: 439 QSEDSIVLDFNYYRADDPSTPRLNQDIWEEVEQIAFFKYGAKPHWAKNRNLAFLDVQSKY 498
           Q+EDS+V+DFNYYRAD+ STPRLNQD+WEE                 NRNLAFL VQ KY
Sbjct: 421 QAEDSVVVDFNYYRADNASTPRLNQDVWEE-----------------NRNLAFLGVQKKY 463

Query: 499 ANFGKFLAAKKQLDSQNIFTSEFFDEMLLGQDSGKDEGCALEGQCICSEDRHCSPKKWVF 558
            NF KF+AAKKQLD QNIF+S++ + +L G+++ K +GCALEGQCICS DRHCSP+K  F
Sbjct: 464 PNFNKFVAAKKQLDPQNIFSSDWSEAILFGKEAEKGDGCALEGQCICSGDRHCSPEKGYF 523

Query: 559 LQ 560
            +
Sbjct: 524 CR 525


>GSVIVT01027428001 assembled CDS
          Length = 530

 Score =  406 bits (1044), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/544 (40%), Positives = 301/544 (55%), Gaps = 63/544 (11%)

Query: 23  PPPAPVRC--DNTGCTLFNSYGAWNDRKACFVPNVLYPSTEEKLRLAVGYAXXXXXXXXX 80
           PP  P++C   NT CT+ NSYGA+ DR  C    V YP+TEE+L   V  A         
Sbjct: 24  PPEDPIKCASKNTNCTITNSYGAFPDRSRCRASAVAYPTTEEELISVVAKAAMDRTKMKA 83

Query: 81  XXXFSHTIPKLACPAASEHKNSILISTLNYSSSIEIDKANLAVTVDAGVGLRQLIDKVEE 140
              FSH+IPKL C   ++ ++ +LIST                    G  LRQ+ID+  +
Sbjct: 84  VTRFSHSIPKLVC---TDGEDGLLIST-------------------NGATLRQVIDEAAK 121

Query: 141 AGLSLVTAPYWEGASVGGVICTXXXXXXXXXXXXAVHDHVIGLSLIVPAKESEGYAKIIR 200
           AGL+L  APYW G ++GG++ +            +VH++V  L +I PA    GY ++  
Sbjct: 122 AGLALPYAPYWWGLTIGGLLSSGAHGSSLWSKGSSVHEYVEQLRIITPAGRENGYVQVRT 181

Query: 201 IEAQDPLLKAAKVSLGMLGVISKVKLSLEQAFKRSITYNFTDDGNIEDMIINHGKKYEFG 260
           ++     L AAKVS+G+LGVIS+  L L+  FKRSI Y   +D ++ D     G ++EF 
Sbjct: 182 LDTSHEDLNAAKVSIGVLGVISQATLRLQPLFKRSIDYTTKNDSDLADQAATFGSRHEFA 241

Query: 261 DITWYPSRHTAVYRYDSRVPLNASGDGVFDFLGFQSNSIVVSQTTRATEKSLEKANNVNG 320
           DITWYPS+  AVYR D RVP N SG+G+ DF GF+S S +     R TE++ E   N +G
Sbjct: 242 DITWYPSQGKAVYRIDDRVPSNTSGNGLNDFTGFRSTSSLALALLRTTEENQELKGNADG 301

Query: 321 KCLLAA-TFVGFKKLVANGLKNGLLFTGYPVVGHQGKMQTSGSCLYSPETRIDTSCAWDP 379
           KC  A  T +   +       NG++FTGYPV+G+  ++Q SG+CL S E    T+C WDP
Sbjct: 302 KCTAAKLTTLALSRAAYGLTNNGIIFTGYPVIGYHNRLQASGTCLDSIEDARITACPWDP 361

Query: 380 RINGLFFYETTAIFPASKFQDFIKDVKKLRDIKPENFCGVDIYNGFLIRYIKASDAYLGQ 439
           R+ G FF++TT                                  F I   +AS AYLG+
Sbjct: 362 RVKGQFFHQTT----------------------------------FSIALSRASTAYLGK 387

Query: 440 SEDSIVLDFNYYRADDPSTPRLNQDIWEEVEQIAFFKYGAKPHWAKNRNLAFLDVQSKYA 499
            ED++  D  +YR+ DP TPRL +DI EEVEQ+  FKYG  PHWAKNRNLAF     KY 
Sbjct: 388 QEDALDFDITHYRSKDPMTPRLYEDILEEVEQMGLFKYGGLPHWAKNRNLAFDGAIKKYK 447

Query: 500 NFGKFLAAKKQLDSQNIFTSEFFDEMLLGQDSGK---DEGCALEGQCICSEDRHCSPKKW 556
           N  KFL  K++ D   +F+SE+ D+ +LG   G     +GCALEG CICSED HC+P+K 
Sbjct: 448 NAWKFLKVKERYDPLGLFSSEWTDQ-VLGLKKGVTIFKKGCALEGLCICSEDSHCAPEKG 506

Query: 557 VFLQ 560
            F +
Sbjct: 507 YFCR 510


>GSVIVT01033574001 assembled CDS
          Length = 443

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 11/143 (7%)

Query: 114 IEIDKANLAVTVDAGVGLRQLIDKVEEAGLSLVTAPYWEGASVGGVICTXXXXXXXXXXX 173
           +++D     V V AG+ ++QL+D +++ G++L          +GG++             
Sbjct: 11  LDVDVEKKRVRVQAGIRVQQLVDAIKDYGITLQNFASIREQQIGGIV--QVGAHGTGARL 68

Query: 174 XAVHDHVIGLSLIVPAKESEGYAKIIRIEAQDP-LLKAAKVSLGMLGVISKVKLSLEQAF 232
             + + VI + L+ PAK +   +K      +DP L   A+  LG LGV+++V L   Q  
Sbjct: 69  PPIDEQVISMKLVTPAKGTIEVSK-----ERDPELFYLARCGLGGLGVVAEVTL---QCV 120

Query: 233 KRSITYNFTDDGNIEDMIINHGK 255
           +R      T   N++++  NH K
Sbjct: 121 ERQELVEHTVVSNMKEIKKNHKK 143