Jatropha Genome Database

JcCA0304111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0304111.10 - phase: 0 
         (323 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031086001 assembled CDS                                       461   e-130
GSVIVT01006388001 assembled CDS                                        59   3e-09

>GSVIVT01031086001 assembled CDS
          Length = 335

 Score =  461 bits (1187), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/335 (66%), Positives = 261/335 (77%), Gaps = 12/335 (3%)

Query: 1   MADFQTSTHRAKWIFTPQQLVEKHKATNQRAKQMLEKYGTTRMEVDVDGSLSYPEPQVNT 60
           MADFQTSTHR+KWIFTPQ L+EK+KA NQRAKQ LEKYG TR+EVD DGSL YPEPQ++ 
Sbjct: 1   MADFQTSTHRSKWIFTPQDLIEKYKAANQRAKQTLEKYGVTRIEVDADGSLQYPEPQISA 60

Query: 61  AENAYKHSRPKPLSVEEEQFMRVYYEYKLRE------------ATALIYFKRFYLQWSVM 108
            +NA K SRPKPL+ EEE+FMR +YEYK++E            ATALIY+KRFYLQWSVM
Sbjct: 61  KDNAEKRSRPKPLNFEEERFMRSFYEYKIQEVCAAFSFPHKIQATALIYYKRFYLQWSVM 120

Query: 109 EHDPKNIMLTCIYSACKIEENHVSAEELGKGISQDHHMILNYEMIILQSLEFDLIVYAPY 168
           EH PK+IMLTCIY+ACKIEENHVSAEELGKGI+QDH MILN EMI+LQSL+FDLIV+APY
Sbjct: 121 EHHPKHIMLTCIYAACKIEENHVSAEELGKGIAQDHQMILNNEMIVLQSLDFDLIVFAPY 180

Query: 169 RSVEGFINDMEEFCHATDDQIQMLKELQSSAVAEVDKIMFTDAPLLFPPGQLALAALRSA 228
           RSVEGF++DMEEFC A +D++QMLK+L  +A  EVDK M TDAPLLFPPGQLALAALR +
Sbjct: 181 RSVEGFVDDMEEFCQAKNDRLQMLKDLHKTAKMEVDKTMLTDAPLLFPPGQLALAALRRS 240

Query: 229 NEMHQVLDFERYLGDILARQNSIHTMSDLFESLDAINSWVKKYKFPTEKDMKHINRKLKS 288
           NE+HQVLDFERYL  IL+RQ+  H  S+L ESL+AI+SWV K++ PT +DMKHI+RKLK 
Sbjct: 241 NEVHQVLDFERYLSSILSRQDFSHAFSELTESLNAIDSWVMKHQVPTTEDMKHIDRKLKF 300

Query: 289 CWGXXXXXXXXXXXXXXXXXXXXXXNEMQNGPSLA 323
           C                        +EMQN P  A
Sbjct: 301 CLDPSSHDKSKKREKKSKHKSKRSASEMQNLPPGA 335


>GSVIVT01006388001 assembled CDS
          Length = 251

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 21/147 (14%)

Query: 92  ATALIYFKRFYLQWSVMEHDPKNIMLTCIYSACKIEENHVSAEEL---GKGISQDHHM-- 146
           ATA+ Y +R Y + ++ E+DP+ +  T +Y A K EE+ V A  L    + ++ D     
Sbjct: 63  ATAITYMRRVYTRKAMTEYDPRLVAPTSLYLAAKAEESTVQARLLVFYVRKLNPDEKYRY 122

Query: 147 ----ILNYEMIILQSLEFDLIVYAPYRSVEGFINDMEEFCHATDDQIQMLKELQSSAVAE 202
               IL  EM IL++L + L+V+ PYR++   + D              L +L   +   
Sbjct: 123 EIKDILEMEMKILEALNYYLVVFHPYRALSQLLQDAN------------LNDLTQLSWGI 170

Query: 203 VDKIMFTDAPLLFPPGQLALAALRSAN 229
           V+     D  L++PP  +ALA +  A+
Sbjct: 171 VNDTYKMDLILIYPPHLIALACIYIAS 197