Jatropha Genome Database

JcCA0303171.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0303171.30 + phase: 2 /TE/partial
         (731 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034745001 assembled CDS                                        65   9e-11
GSVIVT01037631001 assembled CDS                                        58   1e-08
GSVIVT01011363001 assembled CDS                                        55   9e-08
GSVIVT01028612001 assembled CDS                                        54   4e-07
GSVIVT01015124001 assembled CDS                                        53   4e-07

>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 63/105 (60%), Gaps = 2/105 (1%)

Query: 80  KAVNIIHHALDIVKYNKVSRCEGTIKVWDKLKVTYEGTDRVKESRINILQREYEMFSMKE 139
           KA+  +H  L    + K+   E    VWDKL+  +EG++R K  R+  L+RE+E+  MK+
Sbjct: 69  KAITCLHSGLTDHIFTKIMNLETPKLVWDKLQGEFEGSERFKTVRLLKLKREFELMKMKD 128

Query: 140 SESIAELNSRFINIVNPLRTLAMKIFKDELVKESLRIL-PKKWDS 183
            E + + + R +++VN +R L  + F D+ V E + +L P+K+++
Sbjct: 129 DEFVKDYSGRLMDVVNQIRLLG-EAFTDQKVVEKIMVLVPQKFEA 172


>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 70/115 (60%), Gaps = 1/115 (0%)

Query: 79  AKAVNIIHHALDIVKYNKVSRCEGTIKVWDKLKVTYEGTDRVKESRINILQREYEMFSMK 138
           AKA   +  A+    + K+ + +   ++W+ LK  Y+G +R+K  ++  L RE+EM  M+
Sbjct: 786 AKAKACLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMR 845

Query: 139 ESESIAELNSRFINIVNPLRTLAMKIFKDELVKESLRILPKKWDS-IGTVMNYKE 192
           ES+++ +  ++ ++I + +R L  +   +++V++ L  LP+K+++ I ++ N K+
Sbjct: 846 ESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKD 900


>GSVIVT01011363001 assembled CDS
          Length = 1752

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 70/115 (60%), Gaps = 1/115 (0%)

Query: 79  AKAVNIIHHALDIVKYNKVSRCEGTIKVWDKLKVTYEGTDRVKESRINILQREYEMFSMK 138
           AKA   +  A+    + K+ + +   ++W+ LK  Y+G +R+K  ++  L RE+EM  M+
Sbjct: 67  AKAKACLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMR 126

Query: 139 ESESIAELNSRFINIVNPLRTLAMKIFKDELVKESLRILPKKWDS-IGTVMNYKE 192
           ES+++ +  ++ ++I + +R L  +   +++V++ L  LP+K+++ I ++ N K+
Sbjct: 127 ESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKD 181


>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%)

Query: 80  KAVNIIHHALDIVKYNKVSRCEGTIKVWDKLKVTYEGTDRVKESRINILQREYEMFSMKE 139
           KA N +  ALD      +   + T  +WD +K  ++GT RVK   +  L++E+++  MK 
Sbjct: 93  KAKNYLFQALDRSILETILNKKTTKDIWDSMKQKFQGTTRVKRGNLQALRKEFKILHMKS 152

Query: 140 SESIAELNSRFINIVNPLRTLAMKIFKDELVKESLRILPKKWDSI 184
            E++ E  SR + I N ++          +V++ LR +  K+D +
Sbjct: 153 GETVNEYFSRTLAIANKMKVNGEDKGNTAVVEKILRSMTSKFDYV 197


>GSVIVT01015124001 assembled CDS
          Length = 780

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 61/100 (61%), Gaps = 1/100 (1%)

Query: 94  YNKVSRCEGTIKVWDKLKVTYEGTDRVKESRINILQREYEMFSMKESESIAELNSRFINI 153
           + ++   + T ++W+ LK  YEG +RVK  ++  L RE+EM  MKESE+I + + + ++I
Sbjct: 84  FTRIMTLKTTNEIWNFLKKEYEGNERVKGMQVLNLIREFEMQRMKESETIKDYSDKLLSI 143

Query: 154 VNPLRTLAMKIFKDELVKESLRILPKKWD-SIGTVMNYKE 192
           VN +R L +      +V++    + +K++ +I ++ N K+
Sbjct: 144 VNKVRLLGVDFSNSRIVQKIFITVSEKFENTISSLENSKD 183