Jatropha Genome Database

JcCA0303171.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0303171.20 - phase: 0 /partial
         (286 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033574001 assembled CDS                                       512   e-146

>GSVIVT01033574001 assembled CDS
          Length = 443

 Score =  512 bits (1318), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 242/286 (84%), Positives = 262/286 (91%)

Query: 1   VGAHGTGARLPPIDEQVISMKLVTPAKGTIEISKEKDPELFYLARCGLGGLGVVAEVTLQ 60
           VGAHGTGARLPPIDEQVISMKLVTPAKGTIE+SKE+DPELFYLARCGLGGLGVVAEVTLQ
Sbjct: 59  VGAHGTGARLPPIDEQVISMKLVTPAKGTIEVSKERDPELFYLARCGLGGLGVVAEVTLQ 118

Query: 61  CVERQELVEHTYISNMKDIKKNHKKLLSENKHVKYLYIPYTDSVVIVTCNPISKWKGPPK 120
           CVERQELVEHT +SNMK+IKKNHKKLLSENKHVKYLYIPYTD+VV+VTCNP+SKWKGPPK
Sbjct: 119 CVERQELVEHTVVSNMKEIKKNHKKLLSENKHVKYLYIPYTDTVVVVTCNPVSKWKGPPK 178

Query: 121 FKPKYSKDEAIEHVRDLYKESLKKYRTGEIAAKAVDKDETNINELSFTELRDKLLALDPL 180
           FKPKYS+DEAI+HVRDLY+ESLKKY    I AK+ D  E +INELSFTELRDKLLALDPL
Sbjct: 179 FKPKYSRDEAIQHVRDLYQESLKKYSPEAITAKSSDNSEPDINELSFTELRDKLLALDPL 238

Query: 181 NKDHVIKVNQAEAEFWKKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLSKPSMKDLE 240
           NKDHVI+VNQAEAEFW+KSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTL+KPSMKDLE
Sbjct: 239 NKDHVIQVNQAEAEFWRKSEGYRVGWSDEILGFDCGGQQWVSETCFPAGTLAKPSMKDLE 298

Query: 241 YIEELKQLIDKEDIPAPAPIEQRWTACXXXXXXXXXXXXKDDIFSW 286
           YIE+LK+LI+KE+IPAPAPIEQRWT              +DDIFSW
Sbjct: 299 YIEDLKKLIEKEEIPAPAPIEQRWTQSSKSPMSPASSSAEDDIFSW 344