Jatropha Genome Database

JcCA0303171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0303171.10 - phase: 2 /TE/partial
         (248 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000708001 assembled CDS                                       107   7e-24

>GSVIVT01000708001 assembled CDS
          Length = 3033

 Score =  107 bits (266), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 1/154 (0%)

Query: 43   LLIASKEHRESLLEAMTFVRVPARIQSVDMINVLQR-RIGEITFFDSNLPLEGRNHFKPL 101
            LL +S  HR++L  A++ +RV   I    +I+++   R   I F D +LP EG  H +PL
Sbjct: 2880 LLASSSTHRDALTRALSQIRVDTTITPEGLIHMMTAGRATCIVFSDDDLPPEGSGHTRPL 2939

Query: 102  YIQVAVNGHETRNVMVDNGSALCVCPLKMLSKFKIEESKLEPSNMVVKAYDNTMRNAKGT 161
            YI V  +G    +V++DNGSAL VCPL          S   PS   V+AYD+T R   GT
Sbjct: 2940 YISVGCSGRRVPSVLLDNGSALNVCPLATAIALGYAPSDFGPSTQTVRAYDSTRREVMGT 2999

Query: 162  FRAKISMGTIESWIDVVVLDILANYTLLLGRPWL 195
               ++ +G         VL I  ++ LLLGRPW+
Sbjct: 3000 LEIELLIGPATFVAVFQVLRIPTSFNLLLGRPWI 3033