Jatropha Genome Database

JcCA0302931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302931.10 - phase: 0 
         (412 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038211001 assembled CDS                                       498   e-141
GSVIVT01004001001 assembled CDS                                       167   6e-42
GSVIVT01017037001 assembled CDS                                        50   1e-06
GSVIVT01034251001 assembled CDS                                        50   2e-06
GSVIVT01016964001 assembled CDS                                        48   8e-06

>GSVIVT01038211001 assembled CDS
          Length = 764

 Score =  498 bits (1281), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 266/419 (63%), Positives = 305/419 (72%), Gaps = 9/419 (2%)

Query: 1   MASRAILRRKRFLLSSLNQPTCWIRSFSSSEHGE-----PTQSGGLEGSRWVVSHPSANC 55
           MAS+AILRR++ +   LN     I+SF S  +G       +Q+   +GS    ++ S + 
Sbjct: 1   MASKAILRRRKLISDYLNVSIRPIQSFQSFRNGGFGNLLSSQNLDSQGSSSATNNTSLDF 60

Query: 56  DHRYEGGFSLVVRDETLLEASFLG---HSSLGFSTLGHRTGRRDFDSSSGIRWFSNSVRF 112
               +G  + V +D   L  S LG   HS  G +T G   GR +F    G R    SVR 
Sbjct: 61  TGINDGNSTFVAKD-AFLSFSGLGLFRHSYSGITTSGIGNGRSEFICPMGFRLMLQSVRN 119

Query: 113 SSTATAGQPEFGSGKDRNEQQAAKQVKEASPEECDEAVEDLTEVXXXXXXXQVQELQKSS 172
           +STATAGQ E GS  + NE+QAAK  KEASP+ECD+AVE L+         Q+ E QK +
Sbjct: 120 ASTATAGQRELGSDDEENEKQAAKTRKEASPQECDQAVEGLSTAKAKAKAKQLLESQKGA 179

Query: 173 KSILQRIWAMLLGIGPALRAVASMSREDWAKKLRHWKDEFKSTMQHYWLGTKLLWADVRI 232
           KS LQ+ WAMLLGIGPALRAVASMSREDWAKKL HWK+E  ST+QHYWLG KLLWADVRI
Sbjct: 180 KSPLQKTWAMLLGIGPALRAVASMSREDWAKKLIHWKNEIISTLQHYWLGFKLLWADVRI 239

Query: 233 SSRLLVKLASGKGLSRRERQQLTRTTADIFRLVPFAVFIIVXXXXXXXXXXXXXXXXXXX 292
           SSRLL+KLA GKGLSRRERQQLTRTTADIFRLVPFAVFIIV                   
Sbjct: 240 SSRLLLKLAGGKGLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLP 299

Query: 293 STFQDKMKEQEALKRKLNARIEYAKFLQDTVKEMAKEIQNSRSGEAKKTAEDLDGFMSKV 352
           STFQDKMKEQEALKR+LNARIEYA+FLQDTVKEMAKE+QNSRSGE KKTAEDLD F+++V
Sbjct: 300 STFQDKMKEQEALKRRLNARIEYARFLQDTVKEMAKEVQNSRSGEIKKTAEDLDEFLNRV 359

Query: 353 RKGARVSNEEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPYGTDAYLRYMLRRRLQ 411
           R+GA VSN+EIL FAKLFNDELTLDNISRPRLVNMCKYMGISP+GTDAYLRYMLR+RLQ
Sbjct: 360 RRGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRKRLQ 418


>GSVIVT01004001001 assembled CDS
          Length = 432

 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 81/86 (94%)

Query: 326 MAKEIQNSRSGEAKKTAEDLDGFMSKVRKGARVSNEEILGFAKLFNDELTLDNISRPRLV 385
           MAKE+QNS SGE KKTAEDLD FM+KVR GA VSN+EILGFAKLFNDELTLDNISRPRLV
Sbjct: 1   MAKEVQNSHSGEIKKTAEDLDQFMNKVRTGAGVSNDEILGFAKLFNDELTLDNISRPRLV 60

Query: 386 NMCKYMGISPYGTDAYLRYMLRRRLQ 411
           NMCKYMGISPYGTDAYLRYMLR+RLQ
Sbjct: 61  NMCKYMGISPYGTDAYLRYMLRKRLQ 86


>GSVIVT01017037001 assembled CDS
          Length = 510

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 42/69 (60%)

Query: 205 LRHWKDEFKSTMQHYWLGTKLLWADVRISSRLLVKLASGKGLSRRERQQLTRTTADIFRL 264
           LR    +  ST    W+GT+LL+ D+  S  LL+K   G+ ++ RER++L +T ADI  L
Sbjct: 381 LRKSSMKLISTSSDIWMGTQLLFIDIMASLELLLKQMRGRRVTERERKKLKQTLADIASL 440

Query: 265 VPFAVFIIV 273
           +P  + +++
Sbjct: 441 IPVTILMLL 449


>GSVIVT01034251001 assembled CDS
          Length = 426

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 205 LRHWKDEFKSTMQHYWLGTKLLWADVRISSRLLVKLASGKGLSRRERQQLTRTTADIFRL 264
           LR    +  ST    W+GT+LL+ D+  S  LL+K   G+ ++ RER +L +T  DI  L
Sbjct: 295 LRKSSMKLISTSSDIWMGTQLLFIDIMASLELLLKQMRGRRITERERNKLKQTLVDIASL 354

Query: 265 VPFAVFIIV 273
           +P  + +++
Sbjct: 355 IPVTILMLL 363


>GSVIVT01016964001 assembled CDS
          Length = 163

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 205 LRHWKDEFKSTMQHYWLGTKLLWADVRISSRLLVKLASGKGLSRRERQQLTRTTADIFRL 264
           LR    +  ST    W+GT+LL+ D+  S  LL+K   G+ ++ RER++L +T A I  L
Sbjct: 32  LRKSSMKLISTSSDIWMGTQLLFIDIMASLELLLKQMRGRRITERERKKLKQTLAGIASL 91

Query: 265 VPFAVFIIV 273
           +P    +++
Sbjct: 92  IPVTTVMLL 100