Jatropha Genome Database

JcCA0302361.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302361.30 - phase: 0 
         (198 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000034001 assembled CDS                                       214   3e-56
GSVIVT01000030001 assembled CDS                                       209   1e-54
GSVIVT01000033001 assembled CDS                                       200   4e-52
GSVIVT01013423001 assembled CDS                                       130   4e-31
GSVIVT01013422001 assembled CDS                                        55   2e-08

>GSVIVT01000034001 assembled CDS
          Length = 751

 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 97/160 (60%), Positives = 126/160 (78%)

Query: 39  TPLPAEDDAQPVEKVGPSMVFLPPSTTQKERDNVLASAKGAVALSGSAAMGMVGPALGLM 98
           T LP E D    ++V  + +FLP   T +E  N++A+ +G  AL+GSAA+G +GPA+G M
Sbjct: 588 TILPREGDTSAADRVEAAQIFLPSHPTMEELKNIVAATRGGFALTGSAAVGQIGPAIGHM 647

Query: 99  DIGESDDAYLFRVSLPGVARDEKEFSCDIEPDGTILIKGVTTTGEKTVCKNSQIFRMQTQ 158
           DIGE +D+YLFRVSLPGV RDE+EFSC++E DG +LI+GVTTTGE+TV   +Q+F MQTQ
Sbjct: 648 DIGECEDSYLFRVSLPGVKRDEREFSCEVENDGKVLIRGVTTTGERTVYAGNQVFEMQTQ 707

Query: 159 NLCPPGHFSITFQLPGPVNHKQFRGHFGNDGMLEGIVKKK 198
           NLCP GHFSI+FQLPGPV+ +QF G+FG DG+LEGIV K+
Sbjct: 708 NLCPSGHFSISFQLPGPVDPQQFSGNFGIDGILEGIVMKR 747


>GSVIVT01000030001 assembled CDS
          Length = 167

 Score =  209 bits (531), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/173 (61%), Positives = 130/173 (75%), Gaps = 6/173 (3%)

Query: 26  VPYIGSPGMVVDDTPLPAEDDAQPVEKVGPSMVFLPPSTTQKERDNVLASAKGAVALSGS 85
           +PYIG P M      LP E D    ++V P ++F+P    ++E D  +A  K  V L+GS
Sbjct: 1   MPYIG-PDMSYS---LPTEADGGAPQRVRPDIIFMPFGPMEEEPD--IAVTKNGVGLTGS 54

Query: 86  AAMGMVGPALGLMDIGESDDAYLFRVSLPGVARDEKEFSCDIEPDGTILIKGVTTTGEKT 145
           AAMG VG + GL+DIGE +D+YLFRVSLPG ARDE+ FSCDI+PDG ILIKGVTTTGEK 
Sbjct: 55  AAMGKVGSSFGLVDIGEFEDSYLFRVSLPGAARDERRFSCDIKPDGNILIKGVTTTGEKI 114

Query: 146 VCKNSQIFRMQTQNLCPPGHFSITFQLPGPVNHKQFRGHFGNDGMLEGIVKKK 198
           VC+N QIF+MQTQNLCPPGHFSI+FQLPGPV+ +Q  G FG +G+ EGIVKK+
Sbjct: 115 VCRNFQIFKMQTQNLCPPGHFSISFQLPGPVDDQQISGGFGINGIFEGIVKKR 167


>GSVIVT01000033001 assembled CDS
          Length = 251

 Score =  200 bits (508), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/194 (53%), Positives = 144/194 (74%), Gaps = 10/194 (5%)

Query: 5   NNESEFRNHQQPVLAVPPLNSVPYIGSPGMVVDDTPLPAEDDAQPVEKVGPSMVFLPPST 64
           +NE E  N QQ VLAV PLNS+PY  +P M+   +P   E D + VE+ GP  V LP   
Sbjct: 68  DNEKEPGNPQQHVLAVGPLNSIPYF-NPDMLESWSP---EADNETVERAGPG-VILP--- 119

Query: 65  TQKERDNVLASAKGAVALSGSAAMGMVGPALGLMDIGESDDAYLFRVSLPGVARDEKEFS 124
            +KE D+ + + +  V L+ +AA+GMVGP++GL+DIGE +D+Y+FRVSLPGVA +E+ FS
Sbjct: 120 -KKEWDDSIDATRRGVGLTRTAALGMVGPSVGLLDIGEMEDSYMFRVSLPGVAANERLFS 178

Query: 125 CDIEPDGTILIKGVTTTGEKTVCKNSQIFRMQTQNLCPPGHFSITFQLPGPVNHKQFRGH 184
           C+I+PDG + IKGV+TTGE+TV +NSQ+F+M++QNLCPPG FSI+F+LPGPV+ +Q    
Sbjct: 179 CNIKPDGNVFIKGVSTTGEETVYRNSQLFKMKSQNLCPPGPFSISFELPGPVDDQQISTS 238

Query: 185 FGNDGMLEGIVKKK 198
           F N G+ E +VKK+
Sbjct: 239 FEN-GVFEAMVKKR 251


>GSVIVT01013423001 assembled CDS
          Length = 431

 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 89/127 (70%)

Query: 71  NVLASAKGAVALSGSAAMGMVGPALGLMDIGESDDAYLFRVSLPGVARDEKEFSCDIEPD 130
           N ++ +K ++ L+G A     GP +G +DIG S  AY FRV+LPGV +D + F C++E D
Sbjct: 209 NSISPSKASIVLTGVAGEVSAGPPIGRVDIGVSKTAYFFRVALPGVRKDNRHFGCEVEND 268

Query: 131 GTILIKGVTTTGEKTVCKNSQIFRMQTQNLCPPGHFSITFQLPGPVNHKQFRGHFGNDGM 190
           G + I G T+ G +T+ K+ ++F+M+ Q LCPPG F+++F+LPGPV+ + F+ +F +DG+
Sbjct: 269 GKVQIHGSTSAGGRTIVKHPRVFQMKLQQLCPPGPFTVSFRLPGPVDPRLFKANFRSDGI 328

Query: 191 LEGIVKK 197
            EGI+ K
Sbjct: 329 FEGIIVK 335


>GSVIVT01013422001 assembled CDS
          Length = 99

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 113 LPGVARDEKEFSCDIEPDGTILIKGVTTTGEKTVCKNSQIFRMQTQNLCPPGHFSITFQL 172
           +PG  RDE  FS  I  DGT+ I+G+           SQ+ +M+ Q L PPG F+++ +L
Sbjct: 1   MPGAMRDEGSFS--ISKDGTVDIQGMIRYE-----IPSQVPKMKVQQLYPPGPFALSLKL 53

Query: 173 PGPVNHKQFRGHFGNDGMLEGIVKK 197
           PG V+ + F      DG+ E +V K
Sbjct: 54  PGRVDPRMFTCKLRYDGIFEVVVMK 78