Jatropha Genome Database

JcCA0302331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302331.10 + phase: 2 /partial
         (356 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030697001 assembled CDS                                       628   e-180
GSVIVT01008483001 assembled CDS                                       627   e-180
GSVIVT01012040001 assembled CDS                                       611   e-175
GSVIVT01011072001 assembled CDS                                       571   e-163
GSVIVT01017868001 assembled CDS                                       569   e-163
GSVIVT01026235001 assembled CDS                                        70   2e-12

>GSVIVT01030697001 assembled CDS
          Length = 356

 Score =  628 bits (1620), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 303/343 (88%), Positives = 319/343 (93%)

Query: 14  ETTDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILY 73
           + T+KIIAEYIWIGGSGMDLRSKARTLSGPVSDP KLPKWNYDGSSTGQAPGEDSEVILY
Sbjct: 14  DVTEKIIAEYIWIGGSGMDLRSKARTLSGPVSDPHKLPKWNYDGSSTGQAPGEDSEVILY 73

Query: 74  PQAIFRDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYT 133
           PQAIF+DPFRRGNNILV+CDAYTPAGEPIPTNKRH AAKIFSHPDV+AE  WYGIEQEYT
Sbjct: 74  PQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVLAEETWYGIEQEYT 133

Query: 134 LLQKDIKXXXXXXXXXXXXXXXXYYCGVGADKSFGRDIVDAHYKACLYAGVNISGINGEV 193
           LLQ  +K                YYCG+GADK+FGRDIVD+HYKACLYAG+NISGINGEV
Sbjct: 134 LLQNSVKWPIGWPVGGYPGPQGPYYCGIGADKAFGRDIVDSHYKACLYAGINISGINGEV 193

Query: 194 MPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYS 253
           MPGQWEFQVGP+VGISAGDELWVARYILERITEIAGVV+SFDPKPIQGDWNGAGAHTNYS
Sbjct: 194 MPGQWEFQVGPSVGISAGDELWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYS 253

Query: 254 TKSMRNDGGYEVIKKAIEKLGLRHKKHIAAYGEGNERRLTGRHETADINTFKWGVADRGA 313
           TKSMRNDGGYE+IKKAIEKLGLRHK+HIAAYGEGNERRLTGRHETADINTF WGVA+RGA
Sbjct: 254 TKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGA 313

Query: 314 SVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           S+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct: 314 SIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356


>GSVIVT01008483001 assembled CDS
          Length = 356

 Score =  627 bits (1617), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 301/343 (87%), Positives = 320/343 (93%)

Query: 14  ETTDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILY 73
           ETT+K+I EYIW+GGSGMDLRSKARTLSGPVSDP+KLPKWNYDGSSTGQAPGEDSEVILY
Sbjct: 14  ETTEKVIVEYIWVGGSGMDLRSKARTLSGPVSDPAKLPKWNYDGSSTGQAPGEDSEVILY 73

Query: 74  PQAIFRDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYT 133
           PQAIF+DPFRRGNNILV+CD YTPAGEPIPTNKR  AAKIFSHPDV AEVPWYGIEQEYT
Sbjct: 74  PQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRCNAAKIFSHPDVAAEVPWYGIEQEYT 133

Query: 134 LLQKDIKXXXXXXXXXXXXXXXXYYCGVGADKSFGRDIVDAHYKACLYAGVNISGINGEV 193
           LLQK++K                YYCG+GADK++GRDIVDAHYKACLYAG+NISGINGEV
Sbjct: 134 LLQKEVKWPIGWPVGGFPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEV 193

Query: 194 MPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYS 253
           MPGQWE+QVGP+VGISAGDELWV+RYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYS
Sbjct: 194 MPGQWEYQVGPSVGISAGDELWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYS 253

Query: 254 TKSMRNDGGYEVIKKAIEKLGLRHKKHIAAYGEGNERRLTGRHETADINTFKWGVADRGA 313
           TKSMRNDGG+EVIKKAIEKLGLRHK+HIAAYGEGNERRLTGRHETADINTF WGVA+RGA
Sbjct: 254 TKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGA 313

Query: 314 SVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           S+RVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct: 314 SIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356


>GSVIVT01012040001 assembled CDS
          Length = 356

 Score =  611 bits (1576), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 295/343 (86%), Positives = 316/343 (92%)

Query: 14  ETTDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILY 73
           ++T+KIIAEYIWIGGSG DLRSKARTLSGPV+ P++LPKWNYDGSSTGQAPGEDSEVILY
Sbjct: 14  DSTEKIIAEYIWIGGSGNDLRSKARTLSGPVTGPAQLPKWNYDGSSTGQAPGEDSEVILY 73

Query: 74  PQAIFRDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYT 133
           PQAIF+DPFR G+NILV+CDAYTP GEPIPTNKR  AAKIFSHP+V AE PWYGIEQEYT
Sbjct: 74  PQAIFKDPFRGGDNILVMCDAYTPGGEPIPTNKRFNAAKIFSHPEVTAEEPWYGIEQEYT 133

Query: 134 LLQKDIKXXXXXXXXXXXXXXXXYYCGVGADKSFGRDIVDAHYKACLYAGVNISGINGEV 193
           LLQKD+                 YYCG+GADK+FGRDIVDAHYKACLYAG+NISGINGEV
Sbjct: 134 LLQKDVNWPLGWPVGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGINISGINGEV 193

Query: 194 MPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYS 253
           MPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVV+SFDPKPI+GDWNGAGAHTNYS
Sbjct: 194 MPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSFDPKPIKGDWNGAGAHTNYS 253

Query: 254 TKSMRNDGGYEVIKKAIEKLGLRHKKHIAAYGEGNERRLTGRHETADINTFKWGVADRGA 313
           TKSMRN GGY+VIKKAIEKLGLRHK+HI+AYGEGNERRLTGRHETADINTF WGVA+RGA
Sbjct: 254 TKSMRNTGGYDVIKKAIEKLGLRHKEHISAYGEGNERRLTGRHETADINTFCWGVANRGA 313

Query: 314 SVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           S+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct: 314 SIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356


>GSVIVT01011072001 assembled CDS
          Length = 433

 Score =  571 bits (1472), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 270/341 (79%), Positives = 296/341 (86%)

Query: 16  TDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
           TDKIIAEYIWIGGSG+DLRSK+RT+S PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQ
Sbjct: 77  TDKIIAEYIWIGGSGIDLRSKSRTISKPVKHPSELPKWNYDGSSTGQAPGEDSEVILYPQ 136

Query: 76  AIFRDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLL 135
           AIF+DPFR GNNILVICD+YTPAGEPIPTNKRH AA+IFS   V+ EVPWYGIEQEYTLL
Sbjct: 137 AIFKDPFRGGNNILVICDSYTPAGEPIPTNKRHGAAEIFSSQKVINEVPWYGIEQEYTLL 196

Query: 136 QKDIKXXXXXXXXXXXXXXXXYYCGVGADKSFGRDIVDAHYKACLYAGVNISGINGEVMP 195
           Q ++K                YYCG GADKSFGRDI DAHYKACLYAG+NISG NGEVMP
Sbjct: 197 QTNVKWPLGWPVGGYPGPQGPYYCGAGADKSFGRDISDAHYKACLYAGINISGTNGEVMP 256

Query: 196 GQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTK 255
           GQWE+QVGP+VGI AGD +W +RYILERITE AGVVLS DPKPI+GDWNGAG HTNYSTK
Sbjct: 257 GQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTK 316

Query: 256 SMRNDGGYEVIKKAIEKLGLRHKKHIAAYGEGNERRLTGRHETADINTFKWGVADRGASV 315
           SMR DGG+EVIKKAI  L LRH+ HI+AYGEGNERRLTG+HETA I+TF WGVA+RG S+
Sbjct: 317 SMREDGGFEVIKKAILNLSLRHEVHISAYGEGNERRLTGKHETASIDTFSWGVANRGCSI 376

Query: 316 RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           RVGRDTEK GKGY EDRRPASNMDPYVVTS++AETTILW+P
Sbjct: 377 RVGRDTEKNGKGYLEDRRPASNMDPYVVTSLLAETTILWEP 417


>GSVIVT01017868001 assembled CDS
          Length = 432

 Score =  569 bits (1466), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 266/341 (78%), Positives = 298/341 (87%)

Query: 16  TDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ 75
           TDKIIAEY+WIGG+G+DLRSK+RT+S PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQ
Sbjct: 76  TDKIIAEYVWIGGTGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQ 135

Query: 76  AIFRDPFRRGNNILVICDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLL 135
           AIF+DPFR GNNILVICD+YTPAGEPIPTNKRH AA+IF +  V+ EVPW+GIEQEYTLL
Sbjct: 136 AIFKDPFRGGNNILVICDSYTPAGEPIPTNKRHRAAEIFGNKKVIDEVPWFGIEQEYTLL 195

Query: 136 QKDIKXXXXXXXXXXXXXXXXYYCGVGADKSFGRDIVDAHYKACLYAGVNISGINGEVMP 195
           Q ++K                YYC  GADKSFGRDI DAHYKACLYAG+NISG NGEVMP
Sbjct: 196 QPNVKWPLGWPVGAYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMP 255

Query: 196 GQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTK 255
           GQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ DPKPI+GDWNGAG HTNYSTK
Sbjct: 256 GQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTK 315

Query: 256 SMRNDGGYEVIKKAIEKLGLRHKKHIAAYGEGNERRLTGRHETADINTFKWGVADRGASV 315
           SMR DGGYE+IKKAI  L LRHK+HI+AYGEGNERRLTG+HETA+INTF WGVA+RG SV
Sbjct: 316 SMREDGGYELIKKAILNLSLRHKEHISAYGEGNERRLTGKHETANINTFSWGVANRGCSV 375

Query: 316 RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           RVGRDTEK+GKGY EDRRPASNMDPY+VTS++AETTILW+P
Sbjct: 376 RVGRDTEKQGKGYLEDRRPASNMDPYIVTSLLAETTILWEP 416


>GSVIVT01026235001 assembled CDS
          Length = 54

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/41 (78%), Positives = 33/41 (80%)

Query: 257 MRNDGGYEVIKKAIEKLGLRHKKHIAAYGEGNERRLTGRHE 297
           MRN  GY+VI KAIE L L HK HIAAYGEGNERRLTG HE
Sbjct: 1   MRNTAGYDVILKAIENLVLPHKDHIAAYGEGNERRLTGHHE 41