Jatropha Genome Database

JcCA0302271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302271.10 + phase: 0 
         (63 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031242001 assembled CDS                                        84   1e-17
GSVIVT01032434001 assembled CDS                                        61   1e-10

>GSVIVT01031242001 assembled CDS
          Length = 63

 Score = 84.0 bits (206), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 45/63 (71%)

Query: 1  MAGGKIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVV 60
          MA  KIAHATLKGPSVVKE              WKMHHWNEQ+K+R FYD+LEK +ISVV
Sbjct: 1  MAAHKIAHATLKGPSVVKEICIGATLGLLAGGLWKMHHWNEQKKLRTFYDMLEKDQISVV 60

Query: 61 VDE 63
          VDE
Sbjct: 61 VDE 63


>GSVIVT01032434001 assembled CDS
          Length = 65

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%)

Query: 5  KIAHATLKGPSVVKEXXXXXXXXXXXXXXWKMHHWNEQRKVRAFYDLLEKGEISVVVDE 63
          KI  A+ +GPS+ KE              WK +HWN QR+ + FYD+LE+GEISVVV++
Sbjct: 6  KIGQASYRGPSIFKEIMYGLTAGLIAGGLWKRYHWNLQRRNKEFYDMLERGEISVVVED 64