Jatropha Genome Database

JcCA0302221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302221.20 - phase: 0 /partial
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013566001 assembled CDS                                       223   3e-59

>GSVIVT01013566001 assembled CDS
          Length = 974

 Score =  223 bits (569), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/153 (70%), Positives = 132/153 (86%), Gaps = 2/153 (1%)

Query: 2   SQRVTDADLLALVSDEVFQPEIVWQLGDLQITCGTLGLSTATVKLIDANGEQHIACSVGT 61
            + +TD D++ALVSDE+FQP++ W+LGDLQ+TCGTLGLSTATVKLIDA+G++H+ACSVGT
Sbjct: 808 KKNLTDVDVIALVSDEIFQPKVFWKLGDLQVTCGTLGLSTATVKLIDADGQKHVACSVGT 867

Query: 62  GPVDAAYKAVDLIVKEPVELLEYSMTAVTGGIDAIATTRVLICGD-NHKI-DAITGEPSR 119
           GPVD+AYKA+DL+VKE V LLEY + AVT GIDAIATTRVLI G+ NH + +A+TGE   
Sbjct: 868 GPVDSAYKAIDLLVKEQVTLLEYGLNAVTEGIDAIATTRVLIRGEKNHTLTNALTGETVH 927

Query: 120 RTFSGSGAGMDIVVSSVKAYIGALNKMLAVNSQ 152
           R+FSG+GAGMDIVVSSV+AYI ALNKML    Q
Sbjct: 928 RSFSGTGAGMDIVVSSVRAYISALNKMLGFKDQ 960