Jatropha Genome Database

JcCA0302221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302221.10 + phase: 0 /pseudo
         (352 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013506001 assembled CDS                                        72   5e-13
GSVIVT01013538001 assembled CDS                                        57   9e-09
GSVIVT01030585001 assembled CDS                                        57   1e-08
GSVIVT01031694001 assembled CDS                                        55   4e-08
GSVIVT01026027001 assembled CDS                                        54   8e-08
GSVIVT01026445001 assembled CDS                                        54   2e-07
GSVIVT01000395001 assembled CDS                                        53   2e-07
GSVIVT01031692001 assembled CDS                                        53   2e-07
GSVIVT01010911001 assembled CDS                                        48   7e-06

>GSVIVT01013506001 assembled CDS
          Length = 423

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 20/133 (15%)

Query: 2   NLLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSA--SSKTLIFCHYD 59
           N L + + DI  R+PVKS++RF+CV +SW +LF++P+FI+ HL +++  S+  L+F H  
Sbjct: 19  NFLSENLIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRLLFKHLS 78

Query: 60  ------YEXXXXXXXXXXXXXLTPVILHKPSVLEGSDILGSCNNGLVCLYAP-------S 106
                 Y                PV    PS  +   I+GS +NGL+CL          S
Sbjct: 79  SSEQEIYSLRSNIAFAEVRRLEVPV----PSKTDYYQIVGS-SNGLICLTESNFKGSYLS 133

Query: 107 GSLYLWNPATREY 119
            +L+LWNPA RE+
Sbjct: 134 LNLFLWNPAIREF 146


>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 15/126 (11%)

Query: 3   LLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTL-IFCHYDYE 61
           + E I+ DILSR+PVKSL+RF+CV ++W +L  +P F+  HL +      + +   +  +
Sbjct: 4   IPEVIMVDILSRLPVKSLLRFRCVCKAWCTLISHPQFVETHLRQQHKRPVIGLVVPHSVD 63

Query: 62  XXXXXXXXXXXXXLTPVILHKPSVLEGSDILGSCNNGLVCLY---------APSGSLYLW 112
                        L   I +K +      +L SC NGL+C+           P   L LW
Sbjct: 64  DPLHKDDLAVDLELHLGIPNKRTTT----VLDSC-NGLLCVVDCYYGFYSLKPPQKLILW 118

Query: 113 NPATRE 118
           NP+TR+
Sbjct: 119 NPSTRQ 124


>GSVIVT01030585001 assembled CDS
          Length = 423

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 12/125 (9%)

Query: 3   LLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKT----LIFCHY 58
           +L + + D+L R+PVKS++RFKCV +SW +LF +P+FI  +L R+ +       L +   
Sbjct: 21  ILSENLVDVLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMNLRRAITHNNCCMLLKYLSS 80

Query: 59  DYEXXXXXXXXXXXXXLTPVILHKPSVLEGSDILGSCNNGLVCLYAPSG-------SLYL 111
             E                + +  PS  +   I+GS +NGL+CL   +          +L
Sbjct: 81  SEEEVYSLRCDKDFAEFRRLQVPVPSKTDYYHIVGS-SNGLICLTESNNKGSYVTVDTFL 139

Query: 112 WNPAT 116
           WNP+ 
Sbjct: 140 WNPSV 144


>GSVIVT01031694001 assembled CDS
          Length = 184

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 15/137 (10%)

Query: 7   IVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFCHYDYEXXXXX 66
           I+ +IL R+PVKSL+RF+CV ++W +L  +P+F+  H     +      C  DY      
Sbjct: 8   IIENILLRLPVKSLIRFRCVCKAWRTLISHPHFVRSHFRLPQTQARTRLCIIDYSERGDN 67

Query: 67  XXXXXXX--------------XLTPVILHKPSVLEGSDILGSCNNGLVCLYAPSGSLYLW 112
                                 L    L      +   +L    +GL+C+   +  + LW
Sbjct: 68  HSMVVRASTKDCEAFSDNDGGSLAFDYLFDIGKFKHEVVLLDSCDGLLCIADLANKIVLW 127

Query: 113 NPATREYINTGYPIPDT 129
           NP+TR++ N   P P+ 
Sbjct: 128 NPSTRQF-NQLPPNPNV 143


>GSVIVT01026027001 assembled CDS
          Length = 372

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 38/130 (29%)

Query: 2   NLLEDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFCHYDYE 61
           ++ ++I+ +IL  +PVKSLMRFKCV +SW  +  +P+F  + L  +A     ++      
Sbjct: 25  HIPDEIILEILCLLPVKSLMRFKCVSKSWREMISDPDFEKKQLAVAARDSGEVYN----- 79

Query: 62  XXXXXXXXXXXXXLTPVILHKPSVLEGSDILGSCNNGLVCL-YAPSGS-----------L 109
                         + +I+H PS+      L SC   L CL Y P G            +
Sbjct: 80  --------------SRLIMHYPSMK-----LKSCP--LSCLFYEPVGHSVNHEYPENDII 118

Query: 110 YLWNPATREY 119
           ++WNP+TRE+
Sbjct: 119 FVWNPSTREF 128


>GSVIVT01026445001 assembled CDS
          Length = 378

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 13/136 (9%)

Query: 5   EDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIF------CHY 58
           +DI  D+LSR+P K+L+  KCV + W  +  + +FI   L R        F      C  
Sbjct: 4   DDICMDVLSRLPTKTLLGLKCVCKRWRRIISDRSFIQDLLQRPEPLAGFFFQERYQWCDE 63

Query: 59  DYEXXXXXXXXXXXXXLTPVILHKPSVLEGSDILGSCNNGLVC----LYAPSGSLYLWNP 114
           D               +   I     + E   ILGSC NGLVC      +P  S+++ NP
Sbjct: 64  DISTISYIPATMEGTQVQQTIFS--FLPEDVVILGSC-NGLVCCRSVFPSPDPSIFVCNP 120

Query: 115 ATREYINTGYPIPDTK 130
           + +++I      PD +
Sbjct: 121 SNKQWIRLLETTPDKE 136


>GSVIVT01000395001 assembled CDS
          Length = 260

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 5   EDIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFCHYDYEXXX 64
           EDI  +ILSR+PVKSL+  K V + W  L  +P+F+   L  S  + +LIF    YE   
Sbjct: 20  EDITTNILSRLPVKSLLMCKSVSKRWRRLICSPDFVLSQLRWSRENPSLIF-FLRYENEL 78

Query: 65  XXXXXXXXXXLTPVILHKPSVLEGSDILGSCNNGLVCLYAPSG---SLYLWNPATRE 118
                     +      +P+     D++ S  NG +CL    G   ++ +WNPAT+E
Sbjct: 79  IKISGEVFERIPLPFGQRPN---NCDMICSF-NGFICLTNYIGRNHNILIWNPATQE 131


>GSVIVT01031692001 assembled CDS
          Length = 357

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 14/126 (11%)

Query: 7   IVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASSKTLIFCHYDYEXXXXX 66
           I+ +IL R+PVKSL+R +CV ++W +L  +P+F+  HL    +     FC  +Y      
Sbjct: 8   IIENILLRLPVKSLIRSRCVCKAWRTLISHPHFVKSHLRLPQTQARTQFCTLNYGEPGDN 67

Query: 67  XXXXXXX--------------XLTPVILHKPSVLEGSDILGSCNNGLVCLYAPSGSLYLW 112
                                 L    L      +   +L    +GL+CL   +  + LW
Sbjct: 68  YYLVVGASTKDCEAFSDDNGGALAFDYLFDIGGFKYEVVLLDSCDGLLCLVDLANKIVLW 127

Query: 113 NPATRE 118
           NP+TR+
Sbjct: 128 NPSTRQ 133


>GSVIVT01010911001 assembled CDS
          Length = 415

 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 6  DIVRDILSRIPVKSLMRFKCVQRSWLSLFENPNFITQHLNRSASS 50
          D++ +I  R PVK L+RF+ V + WLSL  +P+F  +H  RS++S
Sbjct: 37 DLLTEIFLRTPVKPLLRFRSVSKRWLSLISDPHFCHRHARRSSAS 81