Jatropha Genome Database

JcCA0302101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302101.20 + phase: 0 /partial
         (246 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014465001 assembled CDS                                       437   e-123
GSVIVT01015375001 assembled CDS                                        51   4e-07

>GSVIVT01014465001 assembled CDS
          Length = 808

 Score =  437 bits (1124), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 201/239 (84%), Positives = 222/239 (92%)

Query: 1   MELLRSNLSRVRIPEPTNRIYKDECCISFDTPRSEGGLYVDMNTFLAFGKDSVGWNYEKT 60
           M+LLRSNLSRVRIPEPTNRIYK ECC+SF TP+SEGGL++DM+TFLAFGKD V WNYEKT
Sbjct: 1   MDLLRSNLSRVRIPEPTNRIYKQECCVSFATPKSEGGLFIDMSTFLAFGKDCVDWNYEKT 60

Query: 61  GDAVYLHIKQTRKLVPEDRPSKKPTLLAIGVEGGFDNNEPEYEEIYSIVILPDYVTFPFP 120
           G+ VYLHIKQT+KLVPEDRP KKPTLLAIGV+GGFDNNEPEYEE ++IVILP YV+ PFP
Sbjct: 61  GNPVYLHIKQTKKLVPEDRPLKKPTLLAIGVDGGFDNNEPEYEEAHNIVILPSYVSLPFP 120

Query: 121 SVDLPEKVRLAVDAILMAESAERKEQLAAWTADKKQISAYAMNLPQIDNGVIVPPSGWKC 180
           SV+LPEKVRLAVDAILMAE AERKEQLA WTADKK+ISAYAM+L QIDNGVI+P SGWKC
Sbjct: 121 SVELPEKVRLAVDAILMAEGAERKEQLALWTADKKEISAYAMSLQQIDNGVIIPRSGWKC 180

Query: 181 AKCEKRENLWLNLSDGTILCGRRNWDGSGGNNHAIEHYKETSYPLAVKLGTITADLEAA 239
           +KC+K ENLWLNL+DG ILCGR+NWDG+GGNNHAIEHYKET YPLAVKLGTITADLE A
Sbjct: 181 SKCDKTENLWLNLTDGMILCGRKNWDGTGGNNHAIEHYKETGYPLAVKLGTITADLEGA 239


>GSVIVT01015375001 assembled CDS
          Length = 216

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 98  NEPEYEEIYSIVILPDYVTFPFPSVDLPEKVRLAVDAILMAE 139
           ++P+ EE  ++VILP Y   PF SV+L EKVRL VDAILM E
Sbjct: 173 SKPKCEEAQNMVILPSYAPLPFLSVELLEKVRLVVDAILMTE 214