Jatropha Genome Database

JcCA0302081.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302081.20 - phase: 0 
         (231 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018540001 assembled CDS                                       292   9e-80

>GSVIVT01018540001 assembled CDS
          Length = 230

 Score =  292 bits (747), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 154/230 (66%), Positives = 180/230 (78%), Gaps = 1/230 (0%)

Query: 1   MVLGLRQFTDRRGDGAGEPVLDTDNGEELMHVQPGVAIVIGNRSPESHGTLYISTKKVVW 60
           MV+GLR FT+R GDGAG+PVL+ DNGEELMHV+ GVAIV+GN  PES GTL+ISTK+V+W
Sbjct: 1   MVVGLRNFTERVGDGAGQPVLNADNGEELMHVESGVAIVLGNHPPESPGTLFISTKQVIW 60

Query: 61  LSDVDRAKGYSVDFLNLSLHAVSRDPEAYSSPCIYTQIXXXXXXXXXXXXXXXXXXXXXX 120
           LSDVDRAKGY+VDFL++SLHAVSRDPEAYSSPCIYTQI                      
Sbjct: 61  LSDVDRAKGYAVDFLSVSLHAVSRDPEAYSSPCIYTQIETEENDADSEGSDSECDGTLDL 120

Query: 121 XKITEMRLVPSDPSQLDTLFQIFCECAELNPEPVDEAEEEGHNWVFSADQMVDDTAELED 180
            KITEMRLVPSDPSQL+TLF++FC CAELNPEP DE EEE HNW+FSADQM DD    ++
Sbjct: 121 SKITEMRLVPSDPSQLETLFEMFCGCAELNPEPNDEEEEE-HNWIFSADQMEDDATGEDN 179

Query: 181 SECYFSQNPTSSIGHSNGDHDVARRVLELQINDQRFEDPEEMEHGSDGGH 230
           SE +F+ NP+ SIG SNG HD+A+ +LELQI+D+RFED EEME  S  GH
Sbjct: 180 SEWHFAHNPSHSIGQSNGHHDLAQPMLELQISDERFEDAEEMERNSGSGH 229