Jatropha Genome Database

JcCA0301931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0301931.10 + phase: 0 
         (509 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028441001 assembled CDS                                       611   e-175
GSVIVT01021569001 assembled CDS                                       507   e-144
GSVIVT01021573001 assembled CDS                                       505   e-143
GSVIVT01026384001 assembled CDS                                       464   e-131
GSVIVT01026388001 assembled CDS                                       463   e-131
GSVIVT01000454001 assembled CDS                                       197   8e-51
GSVIVT01026378001 assembled CDS                                       173   2e-43

>GSVIVT01028441001 assembled CDS
          Length = 508

 Score =  611 bits (1575), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 279/481 (58%), Positives = 368/481 (76%), Gaps = 14/481 (2%)

Query: 20  LNADEFRRQGQMIIDFIADYYQNIEKYPVLSQVEPGYLQKRLPHSAPDNPESIETILQDV 79
           ++A++ R  G  ++DFIADYY++IE +PVLSQVEPGYL++ LP SAP+ PES++ +  D+
Sbjct: 1   MDAEQLRENGHKMVDFIADYYKSIENFPVLSQVEPGYLRELLPDSAPNQPESLQQVFDDL 60

Query: 80  RKHILPGITHWQSPNYFAYFAASGSTASFLGEMLSTGFNIVGFNWLSSPAATELESIVMD 139
           +  ILPG+THWQSPN+FAY+ ++ STA FLGEMLS G NIVGF+W++SPAATELE IV+D
Sbjct: 61  QAKILPGVTHWQSPNFFAYYPSNSSTAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLD 120

Query: 140 WLGQVLQLPSCFLFSGSGGGVIQGTTCEAILCTLIAARDQMLRSIGKEKIGKLVVYASDQ 199
           WL ++L LP  FL +G+GGGVIQGT  EA+L  L+AARD++LR++GK  + KLVVY SDQ
Sbjct: 121 WLAKLLNLPDDFLSAGNGGGVIQGTASEAVLVVLLAARDRVLRTVGKTALEKLVVYGSDQ 180

Query: 200 THSALQKAAQIAGISLENFRTIKTNKSTFFSMSPDSLRVTIQSDIEKGLIPLFLCATIGT 259
           THSALQKA QI GI  EN + +K + ST +++SPD L   +  DI  GLIP FLCA +GT
Sbjct: 181 THSALQKACQIGGIHPENCKLLKADSSTGYALSPDLLSEAVSHDITNGLIPFFLCANVGT 240

Query: 260 TSTTAVDPLRPLCDVAREFNIWIHVDAAYAGNACICPEFQHFLDGLEDANSFSLNAHKWL 319
           TS+TAVDPL  L  V +   IW HVDAAYAG+AC+CPE++H++DG+E+A+SF++NAHKW 
Sbjct: 241 TSSTAVDPLLELGKVTKSNGIWFHVDAAYAGSACVCPEYRHYIDGVEEADSFNMNAHKWF 300

Query: 320 LTNLDCCCLWVKDPNALIKSLSTNPEYLKNKASDSAQVVDYKDWQIALSRRFRSLKLWLV 379
           LTN DC  LWVKD NAL+++LSTNP +LKNKASD+  VVDYKDWQ+ L RRFRSLKLW+V
Sbjct: 301 LTNFDCSVLWVKDRNALVQALSTNPVFLKNKASDANMVVDYKDWQVPLGRRFRSLKLWMV 360

Query: 380 LRSYGVRNLRTFLGRHVEMAKVFEGLVREDKMFEIVVPRNFAMVCFRIVPGAIEMGKDGV 439
           LR YGV NL+ ++  H+++AK FE LV +D  FEIV PR FA+VCFR++P          
Sbjct: 361 LRLYGVENLQRYIRNHIKLAKQFEELVAQDPRFEIVAPRKFALVCFRLLP---------- 410

Query: 440 QMLPDR-EILANELNRRLLESINASGCIFMTHGMVGGVYFMRFAVGATLTEDHHVIMAWK 498
              P R E  +N+LN  LL+++N++G ++++H  + G Y +R AVGA LTE+ HV  AWK
Sbjct: 411 ---PHRNEDFSNKLNHNLLDTVNSTGKVYISHTALSGKYTLRLAVGAPLTEERHVNAAWK 467

Query: 499 V 499
           V
Sbjct: 468 V 468


>GSVIVT01021569001 assembled CDS
          Length = 566

 Score =  507 bits (1306), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/487 (53%), Positives = 322/487 (66%), Gaps = 100/487 (20%)

Query: 13  KHKTVNPLNADEFRRQGQMIIDFIADYYQNIEKYPVLSQVEPGYLQKRLPHSAPDNPESI 72
           +H  +NPL+ +EFRRQG MIIDFIA+YY++IEKYPV SQVEPGYL KR+P +AP NPE I
Sbjct: 10  RHCMMNPLDHEEFRRQGHMIIDFIANYYRDIEKYPVRSQVEPGYLHKRIPENAPYNPEPI 69

Query: 73  ETILQDVRKHILPGITHWQSPNYFAYFAASGSTASFLGEMLSTGFNIVGFNWLSSPAATE 132
           ETILQDV+ HI+PG+THW SP +FAY+ A+ S A+                         
Sbjct: 70  ETILQDVQNHIVPGLTHWLSPYHFAYYPANASIAA------------------------S 105

Query: 133 LESIVMDWLGQVLQLPSCFLFSGSGGGVIQGTTCEAILCTLIAARDQMLRSIGKEKIGKL 192
           LES               FLFSG+GGGVIQGTT +A+LCT+IAARDQ+L  IG+E I KL
Sbjct: 106 LES---------------FLFSGNGGGVIQGTTGDAVLCTVIAARDQLLNRIGRENIVKL 150

Query: 193 VVYASDQTHSALQKAAQIAGISLENFRTIKTNKSTFFSMSPDSLRVTIQSDIEKGLIPLF 252
           VVY SDQTH +L KAA+IAGI   N R++KT KS  F++SPDSLR  I SD E GLIPL+
Sbjct: 151 VVYGSDQTHCSLHKAAKIAGIHPNNVRSVKTTKSKAFALSPDSLRAAIISDKEAGLIPLY 210

Query: 253 LCATIGTTSTTAVDPLRPLCDVAREFNIWIHVDAAYAGNACICPEFQHFLDGLEDANSFS 312
           LCAT+GTTS+ AVDP+ PLCDVA ++ IW+H+DAAYAG+ACICP+               
Sbjct: 211 LCATVGTTSSGAVDPVGPLCDVAEDYGIWVHIDAAYAGSACICPD--------------- 255

Query: 313 LNAHKWLLTNLDCCCLWVKDPNALIKSLSTNPEYLKNKASDSAQVVDYKDWQIALSRRFR 372
                                 AL+ + ST+ EYLKN A+DS QVVDYKDWQ+ L+RRFR
Sbjct: 256 ----------------------ALVNAFSTDSEYLKNTATDSKQVVDYKDWQVPLTRRFR 293

Query: 373 SLKLWLVLRSYGVRNLRTFLGRHVEMAKVFEGLVREDKMFEIVVPRNFAMVCFRIVPGAI 432
           ++KLWLVLRSYGV NLR +L RHVEMAK FEGL+  DK FE+VVPRNF++          
Sbjct: 294 AIKLWLVLRSYGVVNLRNYLRRHVEMAKHFEGLIAMDKRFEVVVPRNFSLST-------- 345

Query: 433 EMGKDGVQMLPDREILANELNRRLLESINASGCIFMTHGMVGGVYFMRFAVGATLTEDHH 492
                           ANELNR+LL+S+N SG + MTH +VGG+Y +RF++G  LT+  H
Sbjct: 346 ----------------ANELNRKLLKSLNDSGLVCMTHAIVGGIYMIRFSIGQPLTDYRH 389

Query: 493 VIMAWKV 499
           + MAWKV
Sbjct: 390 IEMAWKV 396


>GSVIVT01021573001 assembled CDS
          Length = 397

 Score =  505 bits (1301), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/483 (54%), Positives = 317/483 (65%), Gaps = 98/483 (20%)

Query: 17  VNPLNADEFRRQGQMIIDFIADYYQNIEKYPVLSQVEPGYLQKRLPHSAPDNPESIETIL 76
           + PLN  EFRRQG MIID +ADYY++IEKYPV SQVEPGYL++ +P  APD PE IETIL
Sbjct: 1   MTPLNHQEFRRQGHMIIDMLADYYRDIEKYPVRSQVEPGYLRQLIPEDAPDYPEPIETIL 60

Query: 77  QDVRKHILPGITHWQSPNYFAYFAASGSTASFLGEMLSTGFNIVGFNWLSSPAATELESI 136
           QDV++ I+PG+THWQSPNYFAYF +SGS A                              
Sbjct: 61  QDVQRDIVPGLTHWQSPNYFAYFPSSGSIAG----------------------------- 91

Query: 137 VMDWLGQVLQLPSCFLFSGSGGGVIQGTTCEAILCTLIAARDQMLRSIGKEKIGKLVVYA 196
                  +L+LP  FLFSG+GGGVI GTTCEAILCTL+AARDQML  +G++ I +LVVYA
Sbjct: 92  -------MLRLPESFLFSGNGGGVIHGTTCEAILCTLVAARDQMLDRVGRDNILRLVVYA 144

Query: 197 SDQTHSALQKAAQIAGISLENFRTIKTNKSTFFSMSPDSLRVTIQSDIEKGLIPLFLCAT 256
           SDQTH ALQKAAQ+AGI  +N R ++T K   F++SP SLR  I SD E G+IPLFLCAT
Sbjct: 145 SDQTHCALQKAAQVAGIHPDNVRVLQTTKLAAFALSPHSLRSAIISDKEAGMIPLFLCAT 204

Query: 257 IGTTSTTAVDPLRPLCDVAREFNIWIHVDAAYAGNACICPEFQHFLDGLEDANSFSLNAH 316
           +GTTS+TAVDP+  LCD                        F+HF               
Sbjct: 205 VGTTSSTAVDPVEALCD------------------------FRHF--------------- 225

Query: 317 KWLLTNLDCCCLWVKDPNALIKSLSTNPEYLKNKASDSAQVVDYKDWQIALSRRFRSLKL 376
                               I +LSTNPEYL+N A++S +VVDYKDWQIALSRRFR++KL
Sbjct: 226 --------------------INALSTNPEYLRNGATNSKRVVDYKDWQIALSRRFRAMKL 265

Query: 377 WLVLRSYGVRNLRTFLGRHVEMAKVFEGLVREDKMFEIVVPRNFAMVCFRIVPGAIEMGK 436
           WLVLRSYGV NLR+F+ RH+EMAK FE L+  DK FE+VVPRNF+ VCFR+ P AI   K
Sbjct: 266 WLVLRSYGVSNLRSFIRRHIEMAKHFEQLIATDKRFEVVVPRNFSTVCFRVSPSAIP--K 323

Query: 437 DGVQMLPDREILANELNRRLLESINASGCIFMTHGMVGGVYFMRFAVGATLTEDHHVIMA 496
              Q   D EI+ N LN +LLES+N SG +FMTH +VGGVY +RFAVGA+LTE+ HV MA
Sbjct: 324 RFYQNSNDNEIV-NALNSKLLESLNGSGRVFMTHAIVGGVYIIRFAVGASLTEERHVNMA 382

Query: 497 WKV 499
           W+V
Sbjct: 383 WEV 385


>GSVIVT01026384001 assembled CDS
          Length = 467

 Score =  464 bits (1195), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/499 (47%), Positives = 306/499 (61%), Gaps = 108/499 (21%)

Query: 1   MGSLDFNLDIDNKHKTVNPLNADEFRRQGQMIIDFIADYYQNIEKYPVLSQVEPGYLQKR 60
           MGSL FN        T +PL+   F  + +M++DFIADYY+N+EKYPV SQV+PGYL   
Sbjct: 1   MGSLSFN--------TFSPLDPQSFSEESKMVVDFIADYYKNVEKYPVQSQVDPGYLMHH 52

Query: 61  LPHSAPDNPESIETILQDVRKHILPGITHWQSPNYFAYFAASGSTASFLGEMLSTGFNIV 120
            P +AP  PE +ETIL+DV   I+PG+THWQSPN+F YF A+ STA FLGEML TG N+V
Sbjct: 53  CPDTAPYCPEPLETILKDVSDGIIPGLTHWQSPNFFGYFQANASTAGFLGEMLCTGLNVV 112

Query: 121 GFNWLSSPAATELESIVMDWLGQVLQLPSCFLFSGSGGGVIQGTTCEAILCTLIAARDQM 180
           GFNW++SPAATELESI                               AI+C+L AARD++
Sbjct: 113 GFNWIASPAATELESI-------------------------------AIICSLAAARDKV 141

Query: 181 LRSIGKEKIGKLVVYASDQTHSALQKAAQIAGISLENFRTIKTNKSTFFSMSPDSLRVTI 240
           L+ +G  KI KLVVY SDQTHS LQKA+++ GI   NFR++ T+ S +F++ PD +R  +
Sbjct: 142 LKKLGHHKITKLVVYGSDQTHSTLQKASKLVGIPASNFRSLPTSFSNYFALCPDDVRTAM 201

Query: 241 QSDIEKGLIPLFLCATIGTTSTTAVDPLRPLCDVAREFNIWIHVDAAYAGNACICPEFQH 300
           + DI  GL+PLFLCAT+GTTS+ AVDPL  L  VA++F +                   H
Sbjct: 202 EEDIGAGLVPLFLCATVGTTSSGAVDPLEALGHVAKDFKV-------------------H 242

Query: 301 FLDGLEDANSFSLNAHKWLLTNLDCCCLWVKDPNALIKSLSTNPEYLKNKASDSAQVVDY 360
            L+G+E A+S S+N HKWLLTN+DCCCLW+K+P   + SLST PE+L+N AS+S +V+DY
Sbjct: 243 HLNGVELAHSISMNPHKWLLTNMDCCCLWIKEPKLFVDSLSTAPEFLRNNASESKKVIDY 302

Query: 361 KDWQIALSRRFRSLKLWLVLRSYGVRNLRTFLGRHVEMAKVFEGLVREDKMFEIVVPRNF 420
           KDWQIALSRRFR++K+W                                     VVPR F
Sbjct: 303 KDWQIALSRRFRAIKVW------------------------------------AVVPRRF 326

Query: 421 AMVCFRIVPGAIEMGKDGVQMLPDREILANELNRRLLESINASGCIFMTHGMVGGVYFMR 480
           A+VCFR              + P  E  + ELN RLL ++N SG  FMTH +VGG+Y +R
Sbjct: 327 ALVCFR--------------LRPREEGESTELNSRLLMAVNGSGAAFMTHAVVGGIYIIR 372

Query: 481 FAVGATLTEDHHVIMAWKV 499
            A+G+TLTE  HV   WK+
Sbjct: 373 CAIGSTLTETRHVDSLWKL 391


>GSVIVT01026388001 assembled CDS
          Length = 448

 Score =  463 bits (1191), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/499 (47%), Positives = 305/499 (61%), Gaps = 108/499 (21%)

Query: 1   MGSLDFNLDIDNKHKTVNPLNADEFRRQGQMIIDFIADYYQNIEKYPVLSQVEPGYLQKR 60
           MGSL FN        T +PL+   F  + +M++DFIADYY+N+EKYPV SQV+PGYL   
Sbjct: 1   MGSLSFN--------TFSPLDPQSFSEESKMVVDFIADYYKNVEKYPVQSQVDPGYLIHH 52

Query: 61  LPHSAPDNPESIETILQDVRKHILPGITHWQSPNYFAYFAASGSTASFLGEMLSTGFNIV 120
            P +AP  PE +ETIL+DV   I+PG+THWQSPN+F YF A+ STA FLGEML TG N+V
Sbjct: 53  CPDTAPYCPEPLETILKDVSDSIIPGLTHWQSPNFFGYFQANASTAGFLGEMLCTGLNVV 112

Query: 121 GFNWLSSPAATELESIVMDWLGQVLQLPSCFLFSGSGGGVIQGTTCEAILCTLIAARDQM 180
           GFNW++SPAATELESI                               AI+C+L AARD++
Sbjct: 113 GFNWIASPAATELESI-------------------------------AIICSLAAARDKV 141

Query: 181 LRSIGKEKIGKLVVYASDQTHSALQKAAQIAGISLENFRTIKTNKSTFFSMSPDSLRVTI 240
           L+ IG  KI KLVVY SDQTHS LQKA+++ GI   NFR++ T+ S  F++ PD +R  +
Sbjct: 142 LKKIGHHKITKLVVYGSDQTHSTLQKASKLVGIPTSNFRSLPTSFSNDFALCPDDVRTAM 201

Query: 241 QSDIEKGLIPLFLCATIGTTSTTAVDPLRPLCDVAREFNIWIHVDAAYAGNACICPEFQH 300
           + DI  GL+PLFLCAT+GTTS+ AVDPL  L  VA++F +                   H
Sbjct: 202 EEDIAAGLVPLFLCATVGTTSSGAVDPLEALGHVAKDFKV-------------------H 242

Query: 301 FLDGLEDANSFSLNAHKWLLTNLDCCCLWVKDPNALIKSLSTNPEYLKNKASDSAQVVDY 360
            L+G+E A+S ++N HKWLLTN+DCCCLW+K+P   + SLST PE+L+N AS+S +V+DY
Sbjct: 243 HLNGVELAHSITMNTHKWLLTNMDCCCLWIKEPKLFVDSLSTAPEFLRNNASESKKVIDY 302

Query: 361 KDWQIALSRRFRSLKLWLVLRSYGVRNLRTFLGRHVEMAKVFEGLVREDKMFEIVVPRNF 420
           KDWQIALSRRFR++K+W                                    +VVPR F
Sbjct: 303 KDWQIALSRRFRAIKVW------------------------------------VVVPRRF 326

Query: 421 AMVCFRIVPGAIEMGKDGVQMLPDREILANELNRRLLESINASGCIFMTHGMVGGVYFMR 480
           A+VCFR              + P  E    ELN RLL ++N SG  FMTH +VGG+Y +R
Sbjct: 327 ALVCFR--------------LRPREEGEGTELNSRLLMAVNGSGAAFMTHAVVGGIYIIR 372

Query: 481 FAVGATLTEDHHVIMAWKV 499
            A+G+TLTE  HV   WK+
Sbjct: 373 CAIGSTLTEIRHVDSLWKL 391


>GSVIVT01000454001 assembled CDS
          Length = 210

 Score =  197 bits (502), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 92/183 (50%), Positives = 128/183 (69%), Gaps = 13/183 (7%)

Query: 317 KWLLTNLDCCCLWVKDPNALIKSLSTNPEYLKNKASDSAQVVDYKDWQIALSRRFRSLKL 376
           +WLL+ LDCCCLW+K  + + +SLS NPEYL NKA++S  VV++KDWQI + RRF++L+L
Sbjct: 25  EWLLSYLDCCCLWIKQLSKITRSLSINPEYLNNKANESDFVVEFKDWQIGIGRRFKALRL 84

Query: 377 WLVLRSYGVRNLRTFLGRHVEMAKVFEGLVREDKMFEIVVPRNFAMVCFRIVPGAIEMGK 436
           WLV+RSYGV NL++ +   ++MAK+F+ +VR D  FEIV PR F++VCFR+ P       
Sbjct: 85  WLVIRSYGVANLQSHIRFDIQMAKLFKSMVRSDPRFEIVTPRLFSLVCFRLNPWP----- 139

Query: 437 DGVQMLPDREILANELNRRLLESINASGCIFMTHGMVGGVYFMRFAVGATLTEDHHVIMA 496
                   R      LNR LL+ IN +G ++M H +V GVY +R AVG+TLTE+ HV+ A
Sbjct: 140 --------RSATGIGLNRMLLDQINTTGSVYMNHTIVDGVYMLRCAVGSTLTEELHVVAA 191

Query: 497 WKV 499
           WK+
Sbjct: 192 WKL 194


>GSVIVT01026378001 assembled CDS
          Length = 164

 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 101/134 (75%), Gaps = 4/134 (2%)

Query: 18  NPLNADEFRRQGQMIIDFIADYYQNIEKYPVLSQVEPGYLQKRLPHSAPDNPESIETILQ 77
           +PL+   F  + ++I+DFIADYY+N+EKYPV SQV  GYL    P SAP +PE +E+IL+
Sbjct: 10  SPLDPQSFLEESKLIVDFIADYYRNVEKYPVQSQVSSGYLVHHCPDSAPYSPEPLESILK 69

Query: 78  DVRKHILPGITHWQSPNYFAYFAASGSTASFLGEMLSTGFNIVGFNWLSSPAATELESIV 137
           +V   I+PG+TH QSPN+F YF A+ ST  FLGEML TG N +GFNW++SPAATELESIV
Sbjct: 70  EVSDSIIPGLTHLQSPNFFGYFQANASTTGFLGEMLCTGLNAIGFNWIASPAATELESIV 129

Query: 138 MDWLGQVLQLPSCF 151
           MDW+G+     SCF
Sbjct: 130 MDWVGKC----SCF 139