Jatropha Genome Database

JcCA0301151.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0301151.20 + phase: 0 /partial
         (247 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012724001 assembled CDS                                       100   5e-22

>GSVIVT01012724001 assembled CDS
          Length = 1445

 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 91/194 (46%), Gaps = 39/194 (20%)

Query: 49  FNPFLKGTXXXXXXXXXXXXVEGLD------GNSSKPTTG---------EVRNYAVGDSE 93
           FNP+LK +            +EG D      G S+    G         EV+  A+GDSE
Sbjct: 47  FNPYLKESPSLEASSSLSSEIEGPDTNVADSGGSTFVPVGPNLLSNLNMEVQECAIGDSE 106

Query: 94  HGEEVVMRTAF--SSESEKETQSSIH-RRSKRKSDFVSQLENVSVRQKENSFS------- 143
           H EE VM+     +  SE +    +  R  KRKS  +SQ E  ++ +KEN          
Sbjct: 107 HQEESVMQAVVYPAGISENKADKIVSSRHKKRKSVLISQPETETICEKENGSCSGTDVAH 166

Query: 144 --------------KPSMNLDDEDAIWKRTRARYSLASFTLDELETFLQXXXXXXXXXXX 189
                         KP M+LDDEDAI  RTRARYSLASFTLDELETFLQ           
Sbjct: 167 DAAIGALSDTTHSRKPIMDLDDEDAICTRTRARYSLASFTLDELETFLQETDDDDDLQNV 226

Query: 190 XXXXXYRKFLAAVL 203
                Y+KFLAAVL
Sbjct: 227 DDEEEYKKFLAAVL 240