Jatropha Genome Database

JcCA0301151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0301151.10 - phase: 0 
         (423 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012723001 assembled CDS                                       172   4e-43

>GSVIVT01012723001 assembled CDS
          Length = 1046

 Score =  172 bits (435), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 125/236 (52%), Gaps = 55/236 (23%)

Query: 1   MSKPKGHAQKGFVPKVPAGTSTQKADSKKNGDKEGSITRTSSEILESKKKTLESEAHIEE 60
           MS P+G   KGF+PK P  TSTQK D +  G  E   T TSSE  +  K T +S+     
Sbjct: 74  MSGPRGPGPKGFLPKTPVETSTQKRDQRNTGKNEDPSTPTSSEYSQKIKPTAKSD----- 128

Query: 61  EQTFQRIEDKTVNKEKLTGEASSTSEKVSVAKIDQAEQNGNAASVENITVPTDEISIVEK 120
                            TG A                               D IS+ EK
Sbjct: 129 -----------------TGHAK------------------------------DGISLEEK 141

Query: 121 QFDNLKSDTIVKEESTDVNEKTNENA---LRLEMEENQQKQEIEGLAEDNITMGNKFFVY 177
               +KS      ES   +    E+    L+LEME N  KQ +E LAE+N + GNK F Y
Sbjct: 142 NSGIIKSSANEGNESIKFDGVRAEDVSLDLKLEMEANLHKQVLEELAEENFSRGNKMFYY 201

Query: 178 PQAVKPDQDIELYLNRSLSTLNNEPDVFIMGAFNDWRWKSFTMKLNKTHLKGDWWS 233
           PQ VKPDQDIE++LNRS+STL+NEPDV IMGAFNDWRWKSFT++LNKTHL+GDWWS
Sbjct: 202 PQVVKPDQDIEVFLNRSVSTLSNEPDVMIMGAFNDWRWKSFTIQLNKTHLQGDWWS 257



 Score =  134 bits (337), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 71/88 (80%)

Query: 324 KVETEKRREILHRLIKSAARSVDNVWYIEPSEFKGEDLVCIYYNKSSGPLAQANELWIHG 383
           + ETE+RRE+L  L+K  A SVDNVW IEP EFKG+DLV +YYN+SSGPLA AN++WIHG
Sbjct: 303 RAETERRREMLQHLMKKGAVSVDNVWCIEPREFKGDDLVRLYYNRSSGPLAHANDIWIHG 362

Query: 384 GYNNWNGGLTIVQKLVSSERKDGDWWYA 411
           G+NNW  GL+IV  L+  E+K+GDWWY 
Sbjct: 363 GHNNWKDGLSIVGSLIKDEKKEGDWWYV 390



 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 168 ITMGNKFFVYPQAVKPDQDIELYLNRSLSTLNNEPDVFIMGAFNDWR-WKSFTMKLNKTH 226
           +++ N + + P+  K D  + LY NRS   L +  D++I G  N+W+   S    L K  
Sbjct: 322 VSVDNVWCIEPREFKGDDLVRLYYNRSSGPLAHANDIWIHGGHNNWKDGLSIVGSLIKDE 381

Query: 227 LK-GDWWSCQIHVPKEAYKMDFVFFNGK----NVYDNNDKKDF 264
            K GDWW  ++ VP+ A  +D+VF +G     ++YDNN ++DF
Sbjct: 382 KKEGDWWYVEVVVPERALVLDWVFADGPPQRASLYDNNHREDF 424



 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 17/141 (12%)

Query: 144 ENALRLEMEEN-QQKQEIEGLAEDNITMGNKFFVY--PQAVKPDQDIELYLNRSLSTLNN 200
           E A+R ++E   + K E +        +  K  VY  P  V+    + +  N + + LN 
Sbjct: 457 EEAIRAKVERTARMKAEAKERTLKMFLLSQKHIVYTEPLDVQAGSTVSVLYNPANTVLNG 516

Query: 201 EPDVFIMGAFNDWRWKSFTMKLNK-------THLKGDWWSCQIHVPKEAYKMDFVFFNGK 253
           + +V+   +FN W  ++ ++   K       +HLK       + VP +AY MDFVF   +
Sbjct: 517 KSEVWFRCSFNRWTHRNGSLPPQKMLPVDNGSHLKA-----TVKVPLDAYMMDFVFSERE 571

Query: 254 N--VYDNNDKKDFCIPVEGGM 272
           +  ++DN +  D+ IPV G +
Sbjct: 572 DGGIFDNRNGMDYHIPVFGSV 592