Jatropha Genome Database

JcCA0300681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0300681.10 - phase: 0 
         (480 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007910001 assembled CDS                                       581   e-166
GSVIVT01012198001 assembled CDS                                       554   e-158
GSVIVT01011507001 assembled CDS                                       317   1e-86

>GSVIVT01007910001 assembled CDS
          Length = 330

 Score =  581 bits (1498), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 306/480 (63%), Positives = 323/480 (67%), Gaps = 150/480 (31%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVARIAAWNSDQLPIYEPGLEEVVNQ 60
           MVKICCIGAGY                                                Q
Sbjct: 1   MVKICCIGAGY------------------------------------------------Q 12

Query: 61  CRGKNLFFSTNVEKHVSEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSN 120
           CRG+NLFFSTNVEKH+SEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADV    
Sbjct: 13  CRGRNLFFSTNVEKHISEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADV---- 68

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
                                    KGI YQILSNPEFLAE                   
Sbjct: 69  -------------------------KGISYQILSNPEFLAE------------------- 84

Query: 181 TPDGQKAIQALKDVYAHWVPEDRIISTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
                                           ELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 85  --------------------------------ELSKLAANAFLAQRISSVNAMSALCEAT 112

Query: 241 GADVSQVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLAEVANYWKQVI 300
           GADVS+VSHA+GKD+RIGPKFLNASVGFGGSCFQKDILNL+YICECNGL EVANYWKQVI
Sbjct: 113 GADVSEVSHAIGKDSRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEVANYWKQVI 172

Query: 301 KVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360
           KVNDYQKNRFVNRVV+SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA L
Sbjct: 173 KVNDYQKNRFVNRVVASMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKASL 232

Query: 361 SVYDPQVTEDQIERDLSLEKFDWDHPVHLQPMSPSAVKQVNVVWDAYEATKDAHGICILT 420
           S+YDPQVT DQI+R++S+ KFDWDHP                      AT+DAHGICILT
Sbjct: 233 SIYDPQVTGDQIQREISMNKFDWDHP----------------------ATRDAHGICILT 270

Query: 421 EWDEFKKLDYKRIFENMQKPAFVFDGRNVVNVEKLREIGFIVYSIGKPLDPWLKDMPAVA 480
           EWDEFK LDY+RIF NMQKPAFVFDGRN+VN+EKLREIGFIVYSIGKPLDPWLKDMPA+A
Sbjct: 271 EWDEFKTLDYQRIFNNMQKPAFVFDGRNIVNIEKLREIGFIVYSIGKPLDPWLKDMPAIA 330


>GSVIVT01012198001 assembled CDS
          Length = 303

 Score =  554 bits (1428), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/369 (75%), Positives = 294/369 (79%), Gaps = 66/369 (17%)

Query: 112 MIADVSKSNKIVVEKSTVPVKTAEAIEKILTHNSKGIKYQILSNPEFLAEGTAIQDLFNP 171
           MIADVSKS+KI                             ILSNPEFLAEGTAIQDL   
Sbjct: 1   MIADVSKSDKI-----------------------------ILSNPEFLAEGTAIQDL--- 28

Query: 172 DRVLIGGRETPDGQKAIQALKDVYAHWVPEDRIISTNLWSAELSKLAANAFLAQRISSVN 231
                                DVYAHWVP +RII TNLWSAELSKLAANAFLAQRISSVN
Sbjct: 29  ---------------------DVYAHWVPVERIICTNLWSAELSKLAANAFLAQRISSVN 67

Query: 232 AMSALCEATGADVSQVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLAE 291
           AMSALCEATGADV++VSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGL E
Sbjct: 68  AMSALCEATGADVTEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPE 127

Query: 292 VANYWKQVIKVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCK 351
           VANYWKQVIKVNDYQK RFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCK
Sbjct: 128 VANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCK 187

Query: 352 GLLGDKARLSVYDPQVTEDQIERDLSLEKFDWDHPVHLQPMSPSAVKQVNVVWDAYEATK 411
           GLLGDKA LS+YDPQ             KFDWDHP+HLQP+SP++VKQV+VVWDAY ATK
Sbjct: 188 GLLGDKAHLSIYDPQ-------------KFDWDHPIHLQPLSPTSVKQVSVVWDAYTATK 234

Query: 412 DAHGICILTEWDEFKKLDYKRIFENMQKPAFVFDGRNVVNVEKLREIGFIVYSIGKPLDP 471
           DAHGICILTEWDEFK LDYK+I++NMQKPAFVFDGRNVV+ EKLREIGFIVYSIGKPLD 
Sbjct: 235 DAHGICILTEWDEFKSLDYKKIYDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDA 294

Query: 472 WLKDMPAVA 480
           WLKDMPAVA
Sbjct: 295 WLKDMPAVA 303


>GSVIVT01011507001 assembled CDS
          Length = 280

 Score =  317 bits (811), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/266 (65%), Positives = 182/266 (68%), Gaps = 78/266 (29%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVARIAAWNSDQLPIYEPGLEEVVNQ 60
           MVKICCIGAGY                                                Q
Sbjct: 1   MVKICCIGAGY------------------------------------------------Q 12

Query: 61  CRGKNLFFSTNVEKHVSEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSN 120
           CRGKNLFFST+VEKHVSEADI+FVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS+
Sbjct: 13  CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 72

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNSKGIK                              E
Sbjct: 73  KIVVEKSTVPVKTAEAIEKILTHNSKGIK------------------------------E 102

Query: 181 TPDGQKAIQALKDVYAHWVPEDRIISTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TP+GQKAIQALKDVYAHWVPEDRI++TNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 103 TPEGQKAIQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 162

Query: 241 GADVSQVSHAVGKDTRIGPKFLNASV 266
           GADV+QVS+AVG DTRIGP   +  V
Sbjct: 163 GADVTQVSYAVGTDTRIGPNIYDPQV 188



 Score =  184 bits (468), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 95/120 (79%), Gaps = 21/120 (17%)

Query: 361 SVYDPQVTEDQIERDLSLEKFDWDHPVHLQPMSPSAVKQVNVVWDAYEATKDAHGICILT 420
           ++YDPQVTEDQI+RDL++                      N+VWDAY ATKDAHGICILT
Sbjct: 182 NIYDPQVTEDQIQRDLTMN---------------------NMVWDAYSATKDAHGICILT 220

Query: 421 EWDEFKKLDYKRIFENMQKPAFVFDGRNVVNVEKLREIGFIVYSIGKPLDPWLKDMPAVA 480
           EWDEFK LDYK+I++NMQKPAFVFDGRN+VN EKLREIGFIVYSIGKPLDPWLKDMPAVA
Sbjct: 221 EWDEFKTLDYKKIYDNMQKPAFVFDGRNIVNAEKLREIGFIVYSIGKPLDPWLKDMPAVA 280