Jatropha Genome Database

JcCA0300671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0300671.10 - phase: 0 /partial
         (214 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030586001 assembled CDS                                        69   2e-12
GSVIVT01030585001 assembled CDS                                        67   5e-12
GSVIVT01013538001 assembled CDS                                        64   5e-11
GSVIVT01013506001 assembled CDS                                        60   5e-10
GSVIVT01026026001 assembled CDS                                        57   7e-09
GSVIVT01031692001 assembled CDS                                        56   1e-08

>GSVIVT01030586001 assembled CDS
          Length = 282

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 40/56 (71%)

Query: 155 RVLCVLSNGEILLQYYCRSLVSYEPNSGTFKELGIRCLPESFNAVVHIASLNWIDT 210
           R+LC+L NGEILL+Y  R LVSY P  G FK+L ++ LP  F   VH+ SL+WID+
Sbjct: 205 RLLCLLKNGEILLEYKGRVLVSYNPERGKFKDLTLKGLPNWFQTFVHVGSLSWIDS 260


>GSVIVT01030585001 assembled CDS
          Length = 423

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 33/199 (16%)

Query: 16  EVQVLTLGNGSLNWR-IKGKTSYQLLGMSSGVLVNGRLHWLTCRH---RYQSLRTLISFD 71
           EV V +L   +  W+ I  K    +    S   VNG LHWL  +    R +S   ++SFD
Sbjct: 195 EVHVYSLKQDA--WKNIDAKVHCHIHDTVSRTFVNGALHWLAAKKNQGRGKSDDLILSFD 252

Query: 72  LEDEKFREVPVPS---RESFGRHCSRLVILKGCLSAV----NQGFRSLYIWVMKEYGVKE 124
           + ++  RE+ +P     ES  + C  L   KG LS +    ++   +  IWVM EYGV  
Sbjct: 253 MVEDNLREMILPEFGYDESSTQKC--LADYKGLLSVLVYNAHRCNDNCDIWVMDEYGVAS 310

Query: 125 SWIKEFSIGASIPRDLYYHPEQSIQNFSQARVLCVLSNGEILLQYYCRSLVSYEPNSGTF 184
           SW K F+    +   +               +L  L NGE+++Q     LV+ +PN G  
Sbjct: 311 SWTKRFTFCLDVEILI---------------LLDFLDNGEVVVQNKNGGLVACDPNGGKI 355

Query: 185 KEL---GIRCLPESFNAVV 200
           ++L   G  CL +    +V
Sbjct: 356 RDLKVAGPACLVKYIETLV 374


>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 22/158 (13%)

Query: 14  ESEVQVLTLGNGSLNWRIKGKTSYQLLGMSSGVLVNGRLHWLTCRHR---YQSLRTLISF 70
           ++ + + TL      WR   +T   ++G  S    NG LHWL  R+         ++++F
Sbjct: 165 KTGIDIFTLKTN--KWRRVEETHSSVIGYWSATYFNGNLHWLAFRYGGYGEDERSSMVAF 222

Query: 71  DLEDEKFREVPVPS-RESFGRHCSRLVILKGCLSAVNQGFRSLYIWVMKEYGVKESWIKE 129
            L +EKF+E+ +PS R  FG     L +L GCL     G  +   WVM+EYG+KESW   
Sbjct: 223 SLREEKFQEMELPSQRAVFG-----LRVLGGCLCV--DGLYTNDKWVMEEYGIKESWKSL 275

Query: 130 FSIGASIPRDLYYHPEQSIQNFSQARVLCVLSNGEILL 167
            +I   +             ++   RVL  L NG +L+
Sbjct: 276 IAIPYRV---------GDGSSWKLPRVLRFLENGVLLV 304


>GSVIVT01013506001 assembled CDS
          Length = 423

 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 35/188 (18%)

Query: 15  SEVQVLTLGNGSLNWR-IKGKTSYQLLGMSSGVLVNGRLHWLTCRHRY--QSLRTLISFD 71
           SE  V +L  GS  WR +       +    S   +NG LHWL  +      +   ++SFD
Sbjct: 191 SEADVYSLRTGS--WRKVDANICCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLILSFD 248

Query: 72  LEDEKFREVPVPS--RESFGRHCSRLVILKGCLSAVNQGFRSLY-------IWVMKEYGV 122
           +  + F+E+ +P    +   R C  L   KG LS +   F   Y       +WVM+EYGV
Sbjct: 249 MAKDVFKEIMLPDFGYDELIRKC--LADYKGSLSVL---FYDAYHSNENCDVWVMEEYGV 303

Query: 123 KESWIKEFSIGASIPRDLYYHPEQSIQNFSQARVLCVLSNGEILLQ-YYCRSLVSYEPNS 181
            +SW K F+I          H  + I  F          NGE +LQ       +S+ P+ 
Sbjct: 304 AKSWTKHFTI---------RHEIEIIIPFE------FFDNGEAILQKKKSGGFISWNPDG 348

Query: 182 GTFKELGI 189
             F++LG+
Sbjct: 349 IRFRDLGV 356


>GSVIVT01026026001 assembled CDS
          Length = 243

 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 19/160 (11%)

Query: 14  ESEVQVLTLGNGSLNWRIKGKTSYQLLGMSSGVLVNGRLHWLTCRHRYQSLRTLISFDLE 73
           E  V+V +L + +  WR      Y L    +G  VNG ++W   R +      + S DL 
Sbjct: 59  EYHVEVFSLRSNA--WRKIRSFPYFLFTDEAGKHVNGSINWAVSRDKNNDHWFIASLDLA 116

Query: 74  DEKFREVPVP--SRESFGRHCSRLVILKGCLSAVNQGFRSLYIWVMKEYGVKESWIKEFS 131
            E +  VP P  + E+       + +L G    + +    + +WVM+EYGVKESW K  +
Sbjct: 117 TESYEVVPQPDCANETLK---PIIRVLGGQFCIIFEYDDIIDVWVMQEYGVKESWSKLVT 173

Query: 132 IG-ASIPRDLYYHPEQSIQNFSQARVLCVLSNGEILLQYY 170
           +   S P D  Y           A+ L  L  G IL+ +Y
Sbjct: 174 VPFFSDPLDANY-----------AKPLFYLKEGAILIDFY 202


>GSVIVT01031692001 assembled CDS
          Length = 357

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 11  LLPESEVQVLTLGNGSLNW-RIKGKTSYQLLGMSSGVLVNGRLHWLTCRHRYQSLRTLIS 69
           L P  E  V      S  W RI+ K   +   M + VL +G LHW+          T+++
Sbjct: 169 LNPNFETVVDVFSLKSNKWKRIQEKHHTRAARMCATVL-HGALHWVA-YDPILGFDTIMA 226

Query: 70  FDLEDEKFREVPVPSRESFGRHCSRLVILKGCLSAVNQGFRSLYIWVMKEYGVKESWIKE 129
           FD E E+FRE+ +P  E       +L ++ GCL  V+       +WVMKEYGV  SW K 
Sbjct: 227 FDFEKERFREMAIPREEE--ELYVKLRVVGGCL-CVHGSKDPSKMWVMKEYGVDTSWSKM 283

Query: 130 FSIGASIPRDL 140
            S   S+  +L
Sbjct: 284 ASPYNSLRNNL 294