Jatropha Genome Database

JcCA0300271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0300271.10 + phase: 0 /partial
         (489 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016464001 assembled CDS                                       681   0.0  
GSVIVT01033555001 assembled CDS                                       452   e-127
GSVIVT01028720001 assembled CDS                                       100   1e-21
GSVIVT01038496001 assembled CDS                                        53   3e-07

>GSVIVT01016464001 assembled CDS
          Length = 618

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/473 (70%), Positives = 373/473 (78%), Gaps = 6/473 (1%)

Query: 1   EMKIIHVAGTKGKGSTCTFTESILRNCGFHTGLFTSPHLIDIRERFRLDGGDICEEKFLA 60
           +MKIIHVAGTKGKGSTCTFTESILRNCGF TGLFTSPHLID+RERFRLDG +ICEEKFLA
Sbjct: 141 KMKIIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVEICEEKFLA 200

Query: 61  YFWWCYDRLKEKTTEDIPMPTYXXXXXXXXXXXXXXEQVDVAILEVGLGGRFDATNVVQT 120
           YFWWC+DRLKEKT ED+PMPT+              EQVDV ILEVGLGGR DATNVVQ 
Sbjct: 201 YFWWCWDRLKEKTDEDVPMPTFFHFIALLAFKIFAAEQVDVVILEVGLGGRLDATNVVQE 260

Query: 121 PIVCGIASLGYDHMEILGNTLGEIAGEKAGIFKHGIPAFTVPQPDEAMRVLEEKASKLDV 180
           PIVCGI SLGYDHMEILG+TLGEIAGEKAGIFK G+PAFTVPQP+EAM VLE KAS+LDV
Sbjct: 261 PIVCGITSLGYDHMEILGHTLGEIAGEKAGIFKRGVPAFTVPQPEEAMCVLEAKASQLDV 320

Query: 181 PLQVAPPLDSXXXXXXXXXXXXXHQYINAGLAIALASKWLQRTGHLEVTYFEQNNSLPEQ 240
           PLQV PP+D+             HQY+NAGLAIAL S WLQRT HLE+ Y EQ +SLPEQ
Sbjct: 321 PLQVIPPMDASLLNGLKLGLEGEHQYLNAGLAIALCSTWLQRTSHLEINYLEQTSSLPEQ 380

Query: 241 FIKGLTTACLQGRAQIVPDRYINTECDGDLVFYLDGAHSPESMEACARWFSIAIKDSNQQ 300
           FIKGLTTA LQGRAQIVPDR IN E  GDLVFYLDGAHSPESME CARWFS+AIK+ +QQ
Sbjct: 381 FIKGLTTASLQGRAQIVPDRCINIESPGDLVFYLDGAHSPESMEICARWFSLAIKEDDQQ 440

Query: 301 STFNCPSQNNYQPATELVEKHHDGRPKSNFMQILLFNCMSVRDPQLLLPRLMKTCASHGV 360
            T N   Q++   + ELV+K + G  + N  QILLFNCMSVRDP LLLP LM TCASHGV
Sbjct: 441 PTLNYQPQDDVGSSRELVQKDYHGTSRKNTTQILLFNCMSVRDPHLLLPHLMNTCASHGV 500

Query: 361 SFKKALFVPNVSVYYKVGSQSLPQTD--VDLSWQFTSQKLWENLVRGDKGGEANNAGPVC 418
            FK+ALFVPN+SVY +VGS +LP TD  VDLSWQ T Q+LWE+L+    GG+A N     
Sbjct: 501 HFKQALFVPNISVYNRVGSHALPLTDLQVDLSWQLTLQRLWESLIH---GGDAKNID-TR 556

Query: 419 EEVKDDTGTSVRTCENSAVFPSLPLAIKWLRDNIHQNRSVRIQVMLINTFCFI 471
           EE KDDT  SV +CENS VFPSLPLAIKWLRD++ QN+SVR QV++  +   +
Sbjct: 557 EEGKDDTEKSVISCENSTVFPSLPLAIKWLRDSVRQNQSVRFQVLVTGSLHLV 609


>GSVIVT01033555001 assembled CDS
          Length = 673

 Score =  452 bits (1164), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 254/511 (49%), Positives = 325/511 (63%), Gaps = 50/511 (9%)

Query: 2   MKIIHVAGTKGKGSTCTFTESILRNCGFHTGLFTSPHLIDIRERFRLDGGDICEEKFLAY 61
           +KIIHVAGTKGKGSTCTF E+ILR CGF TGLF SPHLID+RER R+DG DI EEKFL +
Sbjct: 171 LKIIHVAGTKGKGSTCTFCEAILRECGFRTGLFISPHLIDVRERLRIDGLDISEEKFLMH 230

Query: 62  FWWCYDRLKEKTTEDIPMPTYXXXXXXXXXXXXXXEQVDVAILEVGLGGRFDATNVVQTP 121
           FW C++RLKEK T D+PMP                E+VDVAI+EVGLGG+ D+TNV++ P
Sbjct: 231 FWDCWNRLKEKVTNDLPMPPLFQFLSVLAFKIFTCEEVDVAIIEVGLGGKRDSTNVIKEP 290

Query: 122 IVCGIASLGYDHMEILGNTLGEIAGEKAGIFKHGIPAFTVPQPDEAMRVLEEKASKLDVP 181
           +VCGI SLG DH E LG+TLG+IA  KAGIFK  IPAFTVPQ  EAM VL+++A +L+VP
Sbjct: 291 VVCGITSLGMDHTETLGDTLGKIASHKAGIFKPQIPAFTVPQLSEAMDVLQQRAHELEVP 350

Query: 182 LQVAPPLDSXXXXXXXXXXXXXHQYINAGLAIALASKWLQRTGHLE--VTYFEQNNSLPE 239
           L+VA PLD              HQ+INAGLA++L   WLQ TG+ E  +    Q + L E
Sbjct: 351 LEVAAPLDHKNLKGLKLSLSGDHQFINAGLAVSLCKCWLQSTGNWEKLLKNANQEDDLLE 410

Query: 240 QFIKGLTTACLQGRAQIVPDRYINT--------ECDGDLVFYLDGAHSPESMEACARWFS 291
            F++GL+TA L GRAQ V D  + +           GDL+FYLDGAHSPESM+ CARWFS
Sbjct: 411 AFLRGLSTARLSGRAQTVYDTPLKSYNLSEATENSFGDLIFYLDGAHSPESMDVCARWFS 470

Query: 292 IAIKDSNQQSTFNCPSQNNYQPATELVEK--HH--DGRPKSNFM--QILLFNCMSVRDPQ 345
            A+K+       N PS +++     +V    HH  +   +SN +  QILLFNCM VRDP 
Sbjct: 471 NAVKERR-----NSPS-SSFVKVGNMVNGYIHHKKEDTEESNKISKQILLFNCMEVRDPH 524

Query: 346 LLLPRLMKTCASHGVSFKKALFVPNVSVYYKVGS-QSLPQTDV---DLSWQFTSQKLWEN 401
           +LLP+L++TCAS G  F KALFVP++S Y KV S  S+   D+   DLSWQF  Q++WE 
Sbjct: 525 ILLPQLVRTCASSGTHFSKALFVPSISTYNKVTSGDSIVPLDLPARDLSWQFNLQRIWEK 584

Query: 402 LVRGDKGGEANNAGPVCEEVKDDT-------------GTS----VRTCENSAVFPSLPLA 444
           ++        N    V E  K D+             G+S     +   +SAV PSLPL 
Sbjct: 585 IIH-------NKDVVVDESFKMDSPRILPPFEFLYENGSSGSPSSKCLSSSAVMPSLPLT 637

Query: 445 IKWLRDNIHQNRSVRIQVMLINTFCFILYIL 475
           I+WLRD + +N S+R+QV++  +   +  +L
Sbjct: 638 IRWLRDCVKENPSLRLQVLVTGSLHLVGDVL 668


>GSVIVT01028720001 assembled CDS
          Length = 536

 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 8/161 (4%)

Query: 3   KIIHVAGTKGKGSTCTFTESILRNCGFHTGLFTSPHLIDIRERFRLDGGDICEEKFLAYF 62
           K +H+AGTKGKGST  F  +ILR  G+  G +TSPH+  IRER  L  G + E       
Sbjct: 76  KAVHIAGTKGKGSTAAFLANILRTEGYAVGCYTSPHVRTIRERISL--GKLGEPVSAKAL 133

Query: 63  WWCYDRLKEKTTEDIPMP----TYXXXXXXXXXXXXXXEQVDVAILEVGLGGRFDATNVV 118
              + R+K    E + +     ++              E VDVA++E GLGG  DATN++
Sbjct: 134 NCLFHRIKPILDEAVALENGRLSHFEILTAMAFKLFAQENVDVAVIEAGLGGARDATNII 193

Query: 119 QTPIVCG--IASLGYDHMEILGNTLGEIAGEKAGIFKHGIP 157
            +  +    I ++G +H+  LG +L  IA  K+GI K G P
Sbjct: 194 SSSGLAAAVITTIGEEHLAALGGSLESIAMAKSGIIKQGCP 234


>GSVIVT01038496001 assembled CDS
          Length = 71

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/43 (53%), Positives = 33/43 (76%)

Query: 97  EQVDVAILEVGLGGRFDATNVVQTPIVCGIASLGYDHMEILGN 139
           E+V+VAI+++GL G+ D  NV++ PIVCGIASL  DH + L +
Sbjct: 19  EEVEVAIMKIGLEGKKDLKNVIKEPIVCGIASLRKDHTKTLAS 61