Jatropha Genome Database

JcCA0300141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0300141.10 - phase: 0 /partial
         (465 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038252001 assembled CDS                                       470   e-133
GSVIVT01009265001 assembled CDS                                        64   1e-10
GSVIVT01013127001 assembled CDS                                        62   6e-10

>GSVIVT01038252001 assembled CDS
          Length = 515

 Score =  470 bits (1209), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/479 (53%), Positives = 307/479 (64%), Gaps = 34/479 (7%)

Query: 1   MGALVAGVIIDESVLI---DNSAGFXXXXXXXXXXXXXXHSKLHFGLSYSPALTDDKVSL 57
           MG  V  +++DESVL    D +                 HS +   +SY   L+  K SL
Sbjct: 1   MGGGVRRIVLDESVLFGCEDPNGKDSLLPAAEYLLRKLRHSTIPTEISYRHDLSAQKASL 60

Query: 58  LEKIAMQYSFDCFALDATSTDGGLKDITLAWGGIGGTILYVASNSKKDGFNQLSNLGWIT 117
           L+ +A+QYSFDCF LD +ST   L +I LAWG IGG+ILY+ S++  D   +L   GW+ 
Sbjct: 61  LQGVAVQYSFDCFVLDESSTIDALNEIQLAWGDIGGSILYLVSDNNDDLLLKLRTHGWLL 120

Query: 118 VVI---------DAEGAAAGNNSTVLYINKLEELLFTICHLNRKAIGSDAVTVGYIMKPS 168
           V++         D +G  A  +S++ YINKLEEL  TIC LN+K I +D VTVGYIMKPS
Sbjct: 121 VILRSTGQESKDDVDGGPASEDSSMFYINKLEELPLTICRLNKKDISNDVVTVGYIMKPS 180

Query: 169 REEDFAKRGAFPISPTSNGXXXXXXXXXXXXXXXXXHVDIVLHKATDEIISVELGXXXXX 228
           REEDF+KRGAFP+ P+ NG                  VD+VLHKATDEI+S++L      
Sbjct: 181 REEDFSKRGAFPMYPSQNGLIFMPLTFALPISSQLQEVDVVLHKATDEIMSIKLNSSSEL 240

Query: 229 XXXXXXXXGMQELQGYMEDPSNCFVIDPLDKIYPVVDRLKIQQILLGLEDINTEGRNTIR 288
                   GM EL  YME   +  +IDP + I PVVDRLKIQQILLGLEDIN  G   IR
Sbjct: 241 SNRITYTRGMLELGMYMEHHPDFCLIDPFNNIDPVVDRLKIQQILLGLEDINRPGCCRIR 300

Query: 289 GPHFLKVNDFNEPNLVQRLLEAKLTLPSIVKPQVACGIADAHSMAIVFGVEDFKGLSVPL 348
           GP+FLKV++FNE NL+QRL EAKL+LPSIVKPQVACG+ADAHSMAIVF VED+K LSVPL
Sbjct: 301 GPYFLKVDNFNELNLIQRLSEAKLSLPSIVKPQVACGVADAHSMAIVFRVEDYKDLSVPL 360

Query: 349 PAVVQEYVDHSSTLFKIYVLGEKVFYAIKKSMPNVDVLMKLPERN--GPLIFDRFRVQFD 406
           PAV+QEYVDHSSTLFK YVLGEKVFYA+KKS PN   L KL E+N   PLIFD       
Sbjct: 361 PAVIQEYVDHSSTLFKFYVLGEKVFYAVKKSTPNAGTLKKLCEKNELKPLIFD------- 413

Query: 407 NPKLNVHSLKSLPTGTEGSGSKDFFTPNSHYFDVGLVTDAANWLARKLDLTIFGFDVVV 465
                  SLKSLPTG E          N    D+ LVTDAA+WL R LDLTIFGFDVV+
Sbjct: 414 -------SLKSLPTGKENQNV------NDQSIDIKLVTDAASWLRRVLDLTIFGFDVVI 459


>GSVIVT01009265001 assembled CDS
          Length = 315

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 5/145 (3%)

Query: 239 QELQGYMEDPSNCFVIDPLDKIYPVVDRLKIQQILLGLEDINTEGRNTIRGPHFLKVNDF 298
           Q L+ Y +      V+DP D I  V +R  + Q +  L   N+ G+  +     +K +  
Sbjct: 63  QILEDYRQTHPEVTVLDPPDAIQHVHNRQSMLQDVADLNLSNSYGKVGVPKQLVVKRDAS 122

Query: 299 NEPNLVQRLLEAKLTLPSIVKPQVACGIADAHSMAIVFGVEDFKGLSVPLPAVVQEYVDH 358
           + P+ V +   A L LP + KP V  G A +H +++ +     + L  PL  V+QE+V+H
Sbjct: 123 SIPDAVTK---AGLKLPLVAKPLVVDGSAKSHELSLAYDQYSLQKLEPPL--VLQEFVNH 177

Query: 359 SSTLFKIYVLGEKVFYAIKKSMPNV 383
              LFK+Y++GE +    + S+P+V
Sbjct: 178 GGVLFKVYIVGEAIKVVRRFSLPDV 202


>GSVIVT01013127001 assembled CDS
          Length = 378

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 25/150 (16%)

Query: 320 PQVACGIADAHSMAIVFGVEDFKGLSVPLPAVVQEYVDHSSTLFKIYVLGEKVFYAIKKS 379
           P VA G A +H M++VF  +  K L  P+  V+QE+V+H   +FK+YV+GE V    +KS
Sbjct: 120 PLVADGSAKSHKMSLVFNQDGLKKLGPPI--VLQEFVNHGGVIFKVYVVGEYVKCVKRKS 177

Query: 380 MPNVDVLMKLPERNGPLIFDRFRVQFDNPKLNVHSLKSLPTGTEGSGSKDFFTPNSHYFD 439
           +P+V    KL    G L                 S   +   T    + D +    H  D
Sbjct: 178 LPDVSE-EKLNSLEGSL-----------------SFSQVSNITTRERNDDKYYKMMHLED 219

Query: 440 VGL-----VTDAANWLARKLDLTIFGFDVV 464
             +     +TD A  L R + L +F FDV+
Sbjct: 220 TEMPPQSFITDIARGLRRAMKLNLFNFDVI 249