Jatropha Genome Database

JcCA0300071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0300071.10 - phase: 0 
         (321 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032233001 assembled CDS                                       476   e-135
GSVIVT01021404001 assembled CDS                                       166   1e-41
GSVIVT01012723001 assembled CDS                                       132   2e-31
GSVIVT01003706001 assembled CDS                                       102   3e-22
GSVIVT01011429001 assembled CDS                                        77   9e-15
GSVIVT01038557001 assembled CDS                                        59   4e-09

>GSVIVT01032233001 assembled CDS
          Length = 608

 Score =  476 bits (1224), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 219/273 (80%), Positives = 242/273 (88%)

Query: 49  QVGTEKQESSTGFVSKELVWPSPDDEIPFWKRDFPSWDANPEVPTDIVKDSNPMNIIHVT 108
           QVG EKQ +S     K++VWPSPDDEI FW ++FP WD + + P +I KDS+ M+IIHVT
Sbjct: 55  QVGAEKQTASVDSRVKDIVWPSPDDEIVFWNKEFPHWDVSQQAPAEIEKDSDLMHIIHVT 114

Query: 109 AEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLALVTTYNSYHDG 168
           AEMAPIAKVGGLGDVVTGLARACL R H V IMLPFYECIQ++QIS+L L+TTY SY+DG
Sbjct: 115 AEMAPIAKVGGLGDVVTGLARACLSRAHKVDIMLPFYECIQREQISELELITTYESYYDG 174

Query: 169 NWVPTNAYRGVVSDIPVIFIEPSNEFFKGQQVYGGSYNELEAYLFFSRACLEWMQVTEIQ 228
           NWVPTNAYRGVVS IPVIFI+PSN FFKGQ VYGGSYNELEAYL+FSRACLEWMQVT  Q
Sbjct: 175 NWVPTNAYRGVVSGIPVIFIQPSNYFFKGQYVYGGSYNELEAYLYFSRACLEWMQVTGTQ 234

Query: 229 PDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHNMEHYGECRKEQLSKSGLDGSIY 288
           PDIIH+HEWQTG LPLLYWDMYHYLSLK PR+VLTIHNMEHYGECRKE+LSK GLDGSIY
Sbjct: 235 PDIIHIHEWQTGSLPLLYWDMYHYLSLKKPRIVLTIHNMEHYGECRKEELSKCGLDGSIY 294

Query: 289 ATVEKAVDDRTIGHNPERLSLLKGGIVYSNAVV 321
           AT++KAVDDRTIGHNPERLSLLKGGIVYSN V+
Sbjct: 295 ATLDKAVDDRTIGHNPERLSLLKGGIVYSNVVI 327


>GSVIVT01021404001 assembled CDS
          Length = 1011

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/223 (40%), Positives = 130/223 (58%), Gaps = 8/223 (3%)

Query: 102 MNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDL-ALVT 160
           +++IH+ AEMAP+AKVGGLGDVV+GL+RA   +GH V I+LP Y+C+Q  +I DL  L  
Sbjct: 514 LHVIHIAAEMAPVAKVGGLGDVVSGLSRALQKKGHLVEIVLPKYDCMQYDRIRDLRVLDM 573

Query: 161 TYNSYHDGNWVPTNAYRGVVSDIPVIFIEPS--NEFFKGQQVYGGSYNELEAYLFFSRAC 218
              SY DG       + G V  +PV FIEP   ++FF    VY G +++   + +FSRA 
Sbjct: 574 ELESYFDGRLFRNKVWVGTVEGLPVYFIEPHHPSKFFWRGTVY-GEHDDFRRFSYFSRAA 632

Query: 219 LEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHNMEHYGECRKEQL 278
           LE +     +PDIIH H+WQT  +  LYWD+Y    L + R+  T HN E+ G     ++
Sbjct: 633 LELLLQAGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNFEYQGTAPASEM 692

Query: 279 SKSGLDGSIYATVEKAVDDRTIGHNPERLSLLKGGIVYSNAVV 321
           +  GLD       ++  D+       +R++ +KG IV+SN V 
Sbjct: 693 ASCGLDVHHLNRPDRMQDNSA----HDRVNPVKGAIVFSNIVT 731


>GSVIVT01012723001 assembled CDS
          Length = 1046

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 95/168 (56%), Gaps = 5/168 (2%)

Query: 101 PMNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLALVT 160
           PM+I+H+  EMAPIAKVGGLGDVVT L+RA     H V I+LP Y+C+    + D     
Sbjct: 597 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHHVDIILPKYDCLNLSNVKDFQYKR 656

Query: 161 TYNSYHDGNWVPTNAYRGVVSDIPVIFIEPSNEFFKGQQVYGGSYNELEAYLFFSRACLE 220
            Y  +  G  +    + G V  + V F+EP N FF    +Y G  N+ E + FF  A LE
Sbjct: 657 CY--FWGGTEI--KVWFGKVEGLSVYFLEPQNGFFSAGCIY-GCRNDGERFGFFCHAALE 711

Query: 221 WMQVTEIQPDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHNME 268
           ++  +   PDIIH H+W +  +  L+ D Y +  L   RVV TIHN+E
Sbjct: 712 FLLQSGFHPDIIHCHDWSSAPVSWLFKDHYKHYGLSKARVVFTIHNLE 759


>GSVIVT01003706001 assembled CDS
          Length = 769

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 100/186 (53%), Gaps = 7/186 (3%)

Query: 90  EVPTDIVKDSNPMNIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQ 149
           E P+ +    N  +I+H+  EM P+  VG L   VTGL+ A   +G+ V ++LP Y  + 
Sbjct: 45  EAPSQM---ENGFHIVHICTEMVPVVSVGSLASYVTGLSHALQRQGNLVEVILPKYASLD 101

Query: 150 KQQISDLALVTT-YNSYHDGNWVPTNAYRGVVSDIPVIFIEPS--NEFFKGQQVYGGSYN 206
             ++  L  +   + SY +G       + GVV  I V FI+P   + FF  +++YG   +
Sbjct: 102 LDEVQGLREIEAEFYSYFNGQLQGNRIWTGVVYGIGVTFIQPVHYSTFFTRERLYGYP-D 160

Query: 207 ELEAYLFFSRACLEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYHYLSLKNPRVVLTIHN 266
           + E + +FSRA L+++  +  QPD++H+H W+T  +  L+WD++        + + +IH+
Sbjct: 161 DFERFSYFSRASLDYIVKSGKQPDVLHIHNWETAIVGPLFWDVFVKQVQLRIKFICSIHS 220

Query: 267 MEHYGE 272
              + E
Sbjct: 221 GSPFSE 226


>GSVIVT01011429001 assembled CDS
          Length = 788

 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 110/241 (45%), Gaps = 23/241 (9%)

Query: 61  FVSKELVWPSPDDEIPFWKRDFPSWDANPEVPTDIVKDSNP--------MNIIHVTAEMA 112
           F+SK +   SP +E     R+  S + N E    + +D  P        MNII V AE A
Sbjct: 265 FLSKSVETASPKEEKQEDFRELSSEEVNNEAAVSMGEDVKPPPLAGTNVMNIILVAAECA 324

Query: 113 PIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYECIQKQQISDLALVTTYNSYHDGNWVP 172
           P +K GGLGDV   L +A   RGH V ++ P Y    + Q  +  +   Y    DG  + 
Sbjct: 325 PWSKTGGLGDVAGALPKALARRGHRVMVVAPRYGNYAEAQ--ETGVRKKYKV--DGQDME 380

Query: 173 TNAYRGVVSDIPVIFIEPSNEFFKGQQVYGGSYNE-LEAYLFFSRACLE--WM----QVT 225
              ++  +  +  +FI+        + +YGG+  + L+  + F +A +E  W      V 
Sbjct: 381 VTYFQAYIDGVDFVFIDSHMFRHIEKNIYGGNRMDILKRMVLFCKAAIEVPWHVPCGGVC 440

Query: 226 EIQPDIIHV-HEWQTGGLPLLYWDMYHYLS--LKNPRVVLTIHNMEHYGECRKEQLSKSG 282
               +++ + ++W T  LP +Y   Y+  +  ++  R  L IHN+ H G    E  S +G
Sbjct: 441 YGDGNLVFIANDWHTALLP-VYLKAYYRDNGLMQYTRSALVIHNIAHQGRGPVEDFSYTG 499

Query: 283 L 283
           L
Sbjct: 500 L 500


>GSVIVT01038557001 assembled CDS
          Length = 568

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 97/246 (39%), Gaps = 38/246 (15%)

Query: 103 NIIHVTAEMAPIAKVGGLGDVVTGLARACLLRGHTVHIMLPFYE---C------------ 147
           NI+ VT+E AP +K GGLGDV   L  A    GH V ++ P Y+   C            
Sbjct: 59  NIVFVTSESAPYSKTGGLGDVCGSLPIALAAHGHRVMVVSPRYQNGTCSDEIFSGASDLE 118

Query: 148 --IQKQQISDLALVTTYNSYHDG-NWVPTNAYRGVVSDIPVIFIEPSNEFFKGQQVYGGS 204
             I+      +  V+ ++ Y  G +W        V  D P  +  P N +  G   +G  
Sbjct: 119 HPIKVHCFGGVQEVSFFHEYRAGVDW--------VFVDHPS-YHRPGNPYGDGYGAFGD- 168

Query: 205 YNELEAYLFFSRAC-----LEWMQVTEIQPDIIHVHEWQTGGLPLLYWDMYH-YLSLKNP 258
            N+    L    AC     L     T  +  +  V++W    +P+L    Y  +   K+ 
Sbjct: 169 -NQFRFTLLCHAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVPVLLAAKYRPHGVYKDA 227

Query: 259 RVVLTIHNMEHYGECRKEQLSKSGLDGSIYATVEKAVDDRTIGH---NPERLSLLKGGIV 315
           R VL IHN+ H G          GL    Y  VE         H     + ++LLKG IV
Sbjct: 228 RTVLVIHNLAHQGVEPAVTYDNLGLPPEWYGAVEWVFPTWARTHALDTGQAVNLLKGAIV 287

Query: 316 YSNAVV 321
             + ++
Sbjct: 288 TVDRIL 293