Jatropha Genome Database

JcCA0299871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0299871.10 - phase: 0 /partial
         (278 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018681001 assembled CDS                                       454   e-128
GSVIVT01033559001 assembled CDS                                        72   3e-13
GSVIVT01025382001 assembled CDS                                        67   1e-11
GSVIVT01018708001 assembled CDS                                        63   1e-10

>GSVIVT01018681001 assembled CDS
          Length = 564

 Score =  454 bits (1169), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 213/278 (76%), Positives = 244/278 (87%)

Query: 1   GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFLGGGKIFDT 60
           GSANVGKSAFINA LKMMAQRDP     ++YKP+QSAVPGTTLGPIQIDAFLGGGK++DT
Sbjct: 287 GSANVGKSAFINALLKMMAQRDPAAAAAQRYKPIQSAVPGTTLGPIQIDAFLGGGKLYDT 346

Query: 61  PGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFPNAKLASENGVANKFESNGLNGFSIFWG 120
           PGVHLHHRQAAVVHSEDLP LAPRSRLRGQ FPN ++A ++   ++ +SNGLNGFSIFWG
Sbjct: 347 PGVHLHHRQAAVVHSEDLPALAPRSRLRGQCFPNFQVAFDDSTLSRIKSNGLNGFSIFWG 406

Query: 121 GLVRIDILKVLPETSLTFYGPKALQIHIVPTDQADEFYLEELGVLLTPPTGKERAEDWKG 180
           GLVRIDI+KVLP+T LTFYGPKAL IH+VPTD+ADEFY +ELGVLLTPPTGK+RAEDW G
Sbjct: 407 GLVRIDIVKVLPQTRLTFYGPKALNIHMVPTDKADEFYQKELGVLLTPPTGKQRAEDWLG 466

Query: 181 LEIVRQLQIKFEDAERPASDIAISGLGWIAIEPASKSLRRPDMNLGEIAKELHLAVHVPK 240
           LE  RQLQIKFED++RPA D+AISGLGWIA+EP  +SLR  D +L E A++L L++ VPK
Sbjct: 467 LETERQLQIKFEDSDRPACDLAISGLGWIAVEPIGRSLRTSDSDLEETAEQLQLSIQVPK 526

Query: 241 PVEIFVRPPLPVGKYGAEWYQYRELTEKEEELRPRWNF 278
           PVEIFVRPP+PVGK G EWYQYRELTEKE E+RP+W F
Sbjct: 527 PVEIFVRPPIPVGKGGGEWYQYRELTEKEVEVRPQWYF 564


>GSVIVT01033559001 assembled CDS
          Length = 637

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 49/255 (19%)

Query: 1   GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFLGG-GKIFD 59
           GS N GKS  IN      A+R+      +  K  ++AVPGTTLG ++I   L    K++D
Sbjct: 377 GSQNAGKSTLINT----FAKRE----GVKLTKLTEAAVPGTTLGILRIGGILSAKAKMYD 428

Query: 60  TPGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFPNAKLASENGVANKFESNGLNGFSIFW 119
           TPG+   +  +  ++ ++  +   R  L+ +++                     G ++  
Sbjct: 429 TPGLLHPYLMSMRLNRDEQKMAEIRKELQPRTYRMKA-----------------GQAVHV 471

Query: 120 GGLVRIDILKVLPET-SLTFYGPKALQIHIVPTDQADEFYLEELGVLLTPPTGKERAED- 177
           GGL+R+D+ +   ET  +T +    + +H+   + ADE + + +GV L PP   +R  + 
Sbjct: 472 GGLMRLDLNQASVETIYVTIWASPNVSLHMGKIENADEIWRKHVGVRLQPPVRVDRVSEI 531

Query: 178 --WKGLEIVRQLQIKFEDAERPASDIAISGLGWIAIEPASKSLRRPDMNLGEIAKELHLA 235
             W+  EI    ++     +  + DIA++GLGW ++                +  E  LA
Sbjct: 532 GKWEEQEI----KVSGASWDVNSIDIAVAGLGWFSL---------------GLKGEATLA 572

Query: 236 VHVPKPVEIFVRPPL 250
           +     +E+ +R PL
Sbjct: 573 LWTYDGIEVILREPL 587


>GSVIVT01025382001 assembled CDS
          Length = 610

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 100/213 (46%), Gaps = 28/213 (13%)

Query: 1   GSANVGKSAFINASLKMMAQRDPXXXXXRKYKPVQSAVPGTTLGPIQIDAFL-GGGKIFD 59
           G+ N GKS  IN+  K    +             ++ VPGTTLG ++++  L G  K+FD
Sbjct: 343 GAQNAGKSTLINSIGKHAGGKLTHL--------TEAPVPGTTLGIVRVEGVLTGAAKLFD 394

Query: 60  TPGVHLHHRQAAVVHSEDLPILAPRSRLRGQSFPNAKLASENGVANKFESNGLNGFSIFW 119
           TPG+   H+    +  E+  ++     L+ +++             + ++    G S+  
Sbjct: 395 TPGLLNPHQITTRLTGEEQKLVHVSKELKPRTY-------------RIKA----GHSVHI 437

Query: 120 GGLVRIDILKVLPET-SLTFYGPKALQIHIVPTDQADEFYLEELGVLLTPPTGKERAEDW 178
            GL R+D+ ++  +T  +T +    L +H+  T+ A     +  G  L PP G+ R ++ 
Sbjct: 438 AGLARLDVEELSVDTVYITVWASPYLPLHMGKTENACTMVEDHFGRQLQPPIGERRVKEL 497

Query: 179 KGLEIVRQLQIKFEDAERPASDIAISGLGWIAI 211
              E  ++ ++     +  + D+A++GLGW A+
Sbjct: 498 GKWE-RKEFRVSGTSWDSSSVDVAVAGLGWFAV 529


>GSVIVT01018708001 assembled CDS
          Length = 55

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 10/63 (15%)

Query: 216 KSLRRPDMNLGEIAKELHLAVHVPKPVEIFVRPPLPVGKYGAEWYQYRELTEKEEELRPR 275
           +SLR    NL EIAK+L L++ V           +PVGK G EWYQY+ELTEKE E+RP+
Sbjct: 3   RSLRTSGSNLEEIAKQLKLSIRVL----------IPVGKGGGEWYQYQELTEKEVEVRPK 52

Query: 276 WNF 278
           W F
Sbjct: 53  WYF 55